Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16481 | 5' | -57.8 | NC_004084.1 | + | 23 | 0.66 | 0.606125 |
Target: 5'- aGCCAUCCGuGCGuGCA--GACCCGc- -3' miRNA: 3'- aCGGUGGGCuUGC-CGUucUUGGGCcc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 7466 | 0.66 | 0.599727 |
Target: 5'- gGCgACUCGAGCGGCGAcggcgaaggcgagacGAGCaagucggccgaCGGGg -3' miRNA: 3'- aCGgUGGGCUUGCCGUU---------------CUUGg----------GCCC- -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 44267 | 0.66 | 0.595467 |
Target: 5'- gGCCuuCaCGAcgACGGCGAGGugUCGGu -3' miRNA: 3'- aCGGugG-GCU--UGCCGUUCUugGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 16415 | 0.66 | 0.584838 |
Target: 5'- gGCCACUCGAgcaaagACGGCGucGAUgUGGGc -3' miRNA: 3'- aCGGUGGGCU------UGCCGUucUUGgGCCC- -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 14631 | 0.66 | 0.584838 |
Target: 5'- cGCCGCCgGAcucuccgcCGGCGAGcGCCCa-- -3' miRNA: 3'- aCGGUGGgCUu-------GCCGUUCuUGGGccc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 21475 | 0.66 | 0.595467 |
Target: 5'- cGCC-CUCGAggGCGGCGAucGCCuCGGu -3' miRNA: 3'- aCGGuGGGCU--UGCCGUUcuUGG-GCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 8089 | 0.66 | 0.606125 |
Target: 5'- uUGCCGuuCGggUGGCA-GAACCgCGa- -3' miRNA: 3'- -ACGGUggGCuuGCCGUuCUUGG-GCcc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 37577 | 0.66 | 0.627497 |
Target: 5'- gUGCCACCCu--CGGCGAGcgaguUCUGGu -3' miRNA: 3'- -ACGGUGGGcuuGCCGUUCuu---GGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 3449 | 0.66 | 0.638194 |
Target: 5'- gUGaCCugUCGGAUcGCGAGcGCCgGGGg -3' miRNA: 3'- -AC-GGugGGCUUGcCGUUCuUGGgCCC- -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 56200 | 0.66 | 0.606125 |
Target: 5'- gGCCGaagCGAGCGGCGAGGACaUCGa- -3' miRNA: 3'- aCGGUgg-GCUUGCCGUUCUUG-GGCcc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 10273 | 0.66 | 0.616805 |
Target: 5'- aGCCACUCGAGCGGgAGuuGCUCa-- -3' miRNA: 3'- aCGGUGGGCUUGCCgUUcuUGGGccc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 10678 | 0.66 | 0.616805 |
Target: 5'- cGCCAaCCGGAUGGCGGuca-UCGGGa -3' miRNA: 3'- aCGGUgGGCUUGCCGUUcuugGGCCC- -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 43184 | 0.66 | 0.606125 |
Target: 5'- aGUCGCCCGAGgaGguGGAcgauGCCCGGu -3' miRNA: 3'- aCGGUGGGCUUgcCguUCU----UGGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 29314 | 0.66 | 0.616805 |
Target: 5'- cGCUACCUGGAUGGCGcggaGGAcguCCCa-- -3' miRNA: 3'- aCGGUGGGCUUGCCGU----UCUu--GGGccc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 27530 | 0.66 | 0.621081 |
Target: 5'- gGCUACCUGGAUGGaccgguggccgcgcaCAAGGgccuCCCGGa -3' miRNA: 3'- aCGGUGGGCUUGCC---------------GUUCUu---GGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 31990 | 0.66 | 0.627497 |
Target: 5'- aGCCGCCaGAGCGGgCcugGAGGGCUCGa- -3' miRNA: 3'- aCGGUGGgCUUGCC-G---UUCUUGGGCcc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 54745 | 0.67 | 0.573189 |
Target: 5'- cGCCAgCCCGGugGGCGu--GCCaucggucUGGGu -3' miRNA: 3'- aCGGU-GGGCUugCCGUucuUGG-------GCCC- -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 4270 | 0.67 | 0.574246 |
Target: 5'- cGCCcuucgACgCGAACGGCGucAGGugCUGGa -3' miRNA: 3'- aCGG-----UGgGCUUGCCGU--UCUugGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 17840 | 0.67 | 0.542768 |
Target: 5'- aGCCgaGCUCGAGaCGGcCGAGAugUCGGu -3' miRNA: 3'- aCGG--UGGGCUU-GCC-GUUCUugGGCCc -5' |
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16481 | 5' | -57.8 | NC_004084.1 | + | 45510 | 0.67 | 0.542768 |
Target: 5'- gGCCgGgCCGGuCGGCcacuccGAGGACgCCGGGa -3' miRNA: 3'- aCGG-UgGGCUuGCCG------UUCUUG-GGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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