miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16481 5' -57.8 NC_004084.1 + 50335 1.09 0.000668
Target:  5'- cUGCCACCCGAACGGCAAGAACCCGGGc -3'
miRNA:   3'- -ACGGUGGGCUUGCCGUUCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 19469 0.81 0.078691
Target:  5'- aGCCACUCGAaaaacagauccagcaGCGaggcgaGCAGGAGCCCGGGa -3'
miRNA:   3'- aCGGUGGGCU---------------UGC------CGUUCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 47736 0.78 0.111505
Target:  5'- gGCUACCCGAACGGUcgcuGCCCGGc -3'
miRNA:   3'- aCGGUGGGCUUGCCGuucuUGGGCCc -5'
16481 5' -57.8 NC_004084.1 + 54528 0.76 0.15847
Target:  5'- cGgCACCUGGACGGCGAGAucgUCCGGc -3'
miRNA:   3'- aCgGUGGGCUUGCCGUUCUu--GGGCCc -5'
16481 5' -57.8 NC_004084.1 + 5342 0.75 0.190614
Target:  5'- cGUCGCCgagCGGGCGGCGAGGACUgGGa -3'
miRNA:   3'- aCGGUGG---GCUUGCCGUUCUUGGgCCc -5'
16481 5' -57.8 NC_004084.1 + 32011 0.73 0.265543
Target:  5'- gGCCACgCG-ACGG-AAGGGCUCGGGu -3'
miRNA:   3'- aCGGUGgGCuUGCCgUUCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 43789 0.71 0.314215
Target:  5'- cGCCGgCgGAgaguccgGCGGCgAGGAGCgCCGGGa -3'
miRNA:   3'- aCGGUgGgCU-------UGCCG-UUCUUG-GGCCC- -5'
16481 5' -57.8 NC_004084.1 + 2185 0.71 0.314968
Target:  5'- cGCUcgagcGCCgGGACGGCAAGAugCaCGGc -3'
miRNA:   3'- aCGG-----UGGgCUUGCCGUUCUugG-GCCc -5'
16481 5' -57.8 NC_004084.1 + 46944 0.71 0.314968
Target:  5'- cUGUCguGCCCGAGCGGCugcuucGAACUCGaGGu -3'
miRNA:   3'- -ACGG--UGGGCUUGCCGuu----CUUGGGC-CC- -5'
16481 5' -57.8 NC_004084.1 + 29533 0.71 0.327974
Target:  5'- cGCCACCC--GCGGCGAGAucucgcugcggaacGCCCa-- -3'
miRNA:   3'- aCGGUGGGcuUGCCGUUCU--------------UGGGccc -5'
16481 5' -57.8 NC_004084.1 + 29033 0.7 0.366813
Target:  5'- gGCCGCCCGAccguugcucguucuGCuGGCAGGccgcgaccgcccGCUCGGGg -3'
miRNA:   3'- aCGGUGGGCU--------------UG-CCGUUCu-----------UGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 53469 0.7 0.374439
Target:  5'- aGCCACUgcucgauuucguccuCGAGCGGCuGGAGCCCc-- -3'
miRNA:   3'- aCGGUGG---------------GCUUGCCGuUCUUGGGccc -5'
16481 5' -57.8 NC_004084.1 + 50770 0.7 0.387385
Target:  5'- aGCCGCCUGcgauugugagaccGACGaGac-GAACCCGGGa -3'
miRNA:   3'- aCGGUGGGC-------------UUGC-CguuCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 22541 0.69 0.415056
Target:  5'- gGCCGaagacgaCCGAucacGCGGUccGGAUCCGGGu -3'
miRNA:   3'- aCGGUg------GGCU----UGCCGuuCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 41638 0.69 0.423314
Target:  5'- cGCCGCggCGAACGGUgcgAGGAGCgccaucaCCGGGa -3'
miRNA:   3'- aCGGUGg-GCUUGCCG---UUCUUG-------GGCCC- -5'
16481 5' -57.8 NC_004084.1 + 7601 0.69 0.424237
Target:  5'- gUGCCggcGCCCgcGAACGGgucCAGGAcgauuCCCGGGu -3'
miRNA:   3'- -ACGG---UGGG--CUUGCC---GUUCUu----GGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 40586 0.69 0.442959
Target:  5'- gGUCACCauCGAAcuCGGCGAGGAguuCCCGGu -3'
miRNA:   3'- aCGGUGG--GCUU--GCCGUUCUU---GGGCCc -5'
16481 5' -57.8 NC_004084.1 + 50885 0.69 0.452493
Target:  5'- aUGCCGuCCUGGAUGGCugcacccACUCGGGc -3'
miRNA:   3'- -ACGGU-GGGCUUGCCGuucu---UGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 29704 0.69 0.452493
Target:  5'- cGCCgaACCCGcGCGGCcguucGAGGAgaucgUCCGGGc -3'
miRNA:   3'- aCGG--UGGGCuUGCCG-----UUCUU-----GGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 979 0.69 0.459232
Target:  5'- gUGCCACCgGGACGGCcuGAGAcgacgaucacGCUggcguaccugaucgCGGGa -3'
miRNA:   3'- -ACGGUGGgCUUGCCG--UUCU----------UGG--------------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.