miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16481 5' -57.8 NC_004084.1 + 23 0.66 0.606125
Target:  5'- aGCCAUCCGuGCGuGCA--GACCCGc- -3'
miRNA:   3'- aCGGUGGGCuUGC-CGUucUUGGGCcc -5'
16481 5' -57.8 NC_004084.1 + 360 0.67 0.542768
Target:  5'- gGCCuCUCGAAacUGuGCcgcGAGCCCGGGg -3'
miRNA:   3'- aCGGuGGGCUU--GC-CGuu-CUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 979 0.69 0.459232
Target:  5'- gUGCCACCgGGACGGCcuGAGAcgacgaucacGCUggcguaccugaucgCGGGa -3'
miRNA:   3'- -ACGGUGGgCUUGCCG--UUCU----------UGG--------------GCCC- -5'
16481 5' -57.8 NC_004084.1 + 2185 0.71 0.314968
Target:  5'- cGCUcgagcGCCgGGACGGCAAGAugCaCGGc -3'
miRNA:   3'- aCGG-----UGGgCUUGCCGUUCUugG-GCCc -5'
16481 5' -57.8 NC_004084.1 + 3449 0.66 0.638194
Target:  5'- gUGaCCugUCGGAUcGCGAGcGCCgGGGg -3'
miRNA:   3'- -AC-GGugGGCUUGcCGUUCuUGGgCCC- -5'
16481 5' -57.8 NC_004084.1 + 4270 0.67 0.574246
Target:  5'- cGCCcuucgACgCGAACGGCGucAGGugCUGGa -3'
miRNA:   3'- aCGG-----UGgGCUUGCCGU--UCUugGGCCc -5'
16481 5' -57.8 NC_004084.1 + 5342 0.75 0.190614
Target:  5'- cGUCGCCgagCGGGCGGCGAGGACUgGGa -3'
miRNA:   3'- aCGGUGG---GCUUGCCGUUCUUGGgCCc -5'
16481 5' -57.8 NC_004084.1 + 7466 0.66 0.599727
Target:  5'- gGCgACUCGAGCGGCGAcggcgaaggcgagacGAGCaagucggccgaCGGGg -3'
miRNA:   3'- aCGgUGGGCUUGCCGUU---------------CUUGg----------GCCC- -5'
16481 5' -57.8 NC_004084.1 + 7601 0.69 0.424237
Target:  5'- gUGCCggcGCCCgcGAACGGgucCAGGAcgauuCCCGGGu -3'
miRNA:   3'- -ACGG---UGGG--CUUGCC---GUUCUu----GGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 8089 0.66 0.606125
Target:  5'- uUGCCGuuCGggUGGCA-GAACCgCGa- -3'
miRNA:   3'- -ACGGUggGCuuGCCGUuCUUGG-GCcc -5'
16481 5' -57.8 NC_004084.1 + 10273 0.66 0.616805
Target:  5'- aGCCACUCGAGCGGgAGuuGCUCa-- -3'
miRNA:   3'- aCGGUGGGCUUGCCgUUcuUGGGccc -5'
16481 5' -57.8 NC_004084.1 + 10540 0.67 0.532398
Target:  5'- uUGCCGagCC-AGCGGaCGAGuAGCUCGGGg -3'
miRNA:   3'- -ACGGUg-GGcUUGCC-GUUC-UUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 10678 0.66 0.616805
Target:  5'- cGCCAaCCGGAUGGCGGuca-UCGGGa -3'
miRNA:   3'- aCGGUgGGCUUGCCGUUcuugGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 14631 0.66 0.584838
Target:  5'- cGCCGCCgGAcucuccgcCGGCGAGcGCCCa-- -3'
miRNA:   3'- aCGGUGGgCUu-------GCCGUUCuUGGGccc -5'
16481 5' -57.8 NC_004084.1 + 16415 0.66 0.584838
Target:  5'- gGCCACUCGAgcaaagACGGCGucGAUgUGGGc -3'
miRNA:   3'- aCGGUGGGCU------UGCCGUucUUGgGCCC- -5'
16481 5' -57.8 NC_004084.1 + 17840 0.67 0.542768
Target:  5'- aGCCgaGCUCGAGaCGGcCGAGAugUCGGu -3'
miRNA:   3'- aCGG--UGGGCUU-GCC-GUUCUugGGCCc -5'
16481 5' -57.8 NC_004084.1 + 19469 0.81 0.078691
Target:  5'- aGCCACUCGAaaaacagauccagcaGCGaggcgaGCAGGAGCCCGGGa -3'
miRNA:   3'- aCGGUGGGCU---------------UGC------CGUUCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 21475 0.66 0.595467
Target:  5'- cGCC-CUCGAggGCGGCGAucGCCuCGGu -3'
miRNA:   3'- aCGGuGGGCU--UGCCGUUcuUGG-GCCc -5'
16481 5' -57.8 NC_004084.1 + 22023 0.68 0.51188
Target:  5'- cGUgACCgagcgagaggauCGAACGGU-AGAGCUCGGGu -3'
miRNA:   3'- aCGgUGG------------GCUUGCCGuUCUUGGGCCC- -5'
16481 5' -57.8 NC_004084.1 + 22541 0.69 0.415056
Target:  5'- gGCCGaagacgaCCGAucacGCGGUccGGAUCCGGGu -3'
miRNA:   3'- aCGGUg------GGCU----UGCCGuuCUUGGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.