miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16500 5' -56 NC_004084.1 + 26016 0.66 0.696344
Target:  5'- cGUCGaCgGGACCGAacgcggACUCGaUCGAGCGg -3'
miRNA:   3'- -UAGUgGgUCUGGCU------UGAGC-GGUUCGC- -5'
16500 5' -56 NC_004084.1 + 5720 0.66 0.696344
Target:  5'- cGUCGCUCGGGCCGAGgucCUCGaUCGGGa- -3'
miRNA:   3'- -UAGUGGGUCUGGCUU---GAGC-GGUUCgc -5'
16500 5' -56 NC_004084.1 + 36611 0.66 0.685507
Target:  5'- --aACCgCGGACgGAGaagCGCCAGGUGa -3'
miRNA:   3'- uagUGG-GUCUGgCUUga-GCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 35604 0.66 0.685507
Target:  5'- cUCACCCGGcCCGAuCUCcacaGUCAGGUc -3'
miRNA:   3'- uAGUGGGUCuGGCUuGAG----CGGUUCGc -5'
16500 5' -56 NC_004084.1 + 40755 0.66 0.685507
Target:  5'- cGUCGCCCuGugCucgGGugUCGcCCAGGCc -3'
miRNA:   3'- -UAGUGGGuCugG---CUugAGC-GGUUCGc -5'
16500 5' -56 NC_004084.1 + 5793 0.66 0.674618
Target:  5'- cUCACCCuGGuauCCGA---CGCCGGGCGu -3'
miRNA:   3'- uAGUGGG-UCu--GGCUugaGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 16795 0.66 0.674618
Target:  5'- gAUguCCCGGACCG---UCGCCucGCGu -3'
miRNA:   3'- -UAguGGGUCUGGCuugAGCGGuuCGC- -5'
16500 5' -56 NC_004084.1 + 50531 0.66 0.663689
Target:  5'- --aGCCCcGAUcgCGAGCagcuUCGCCGGGCGa -3'
miRNA:   3'- uagUGGGuCUG--GCUUG----AGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 2656 0.66 0.652732
Target:  5'- cAUCGUCCAG-UCGAGCUCGuUCGAGCc -3'
miRNA:   3'- -UAGUGGGUCuGGCUUGAGC-GGUUCGc -5'
16500 5' -56 NC_004084.1 + 39696 0.66 0.652732
Target:  5'- --gGCUC-GACCGAACcCGCCAgugacGGCGa -3'
miRNA:   3'- uagUGGGuCUGGCUUGaGCGGU-----UCGC- -5'
16500 5' -56 NC_004084.1 + 8812 0.66 0.641755
Target:  5'- gAUC-UCCGucGACggCGAACUCGCCAAGUa -3'
miRNA:   3'- -UAGuGGGU--CUG--GCUUGAGCGGUUCGc -5'
16500 5' -56 NC_004084.1 + 31146 0.66 0.641755
Target:  5'- cGUCAgcggUUCGGACCGcgagauCUCGUCGAGCGc -3'
miRNA:   3'- -UAGU----GGGUCUGGCuu----GAGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 15688 0.67 0.630769
Target:  5'- -gCGCUCGcaGCCGAucaACUCGCCGAcGCGa -3'
miRNA:   3'- uaGUGGGUc-UGGCU---UGAGCGGUU-CGC- -5'
16500 5' -56 NC_004084.1 + 9904 0.67 0.630769
Target:  5'- --aACCCgAGAUCGAACcCGCCGAuGCc -3'
miRNA:   3'- uagUGGG-UCUGGCUUGaGCGGUU-CGc -5'
16500 5' -56 NC_004084.1 + 53775 0.67 0.586934
Target:  5'- -cCGCCCGGACCGcuuccaccgguGAcCUCuGCCAcgAGCGu -3'
miRNA:   3'- uaGUGGGUCUGGC-----------UU-GAG-CGGU--UCGC- -5'
16500 5' -56 NC_004084.1 + 56638 0.67 0.586934
Target:  5'- cGUgGCUCAGAaCGAccacCUCGCCAGGCc -3'
miRNA:   3'- -UAgUGGGUCUgGCUu---GAGCGGUUCGc -5'
16500 5' -56 NC_004084.1 + 44029 0.67 0.586934
Target:  5'- cAUCGCC----CCGAuCUCGCCGAGUGg -3'
miRNA:   3'- -UAGUGGgucuGGCUuGAGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 5154 0.68 0.576047
Target:  5'- cGUCGCCCGGcCCGAuCUCGUCGc--- -3'
miRNA:   3'- -UAGUGGGUCuGGCUuGAGCGGUucgc -5'
16500 5' -56 NC_004084.1 + 53109 0.68 0.565207
Target:  5'- -gCACUC-GACgGAGC-CGCCGAGUGg -3'
miRNA:   3'- uaGUGGGuCUGgCUUGaGCGGUUCGC- -5'
16500 5' -56 NC_004084.1 + 52688 0.68 0.55442
Target:  5'- gAUCAUCCcGAUCGAGgacCUCGgcCCGAGCGa -3'
miRNA:   3'- -UAGUGGGuCUGGCUU---GAGC--GGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.