miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16501 3' -53.9 NC_004084.1 + 26445 0.66 0.850367
Target:  5'- ----gGCGGCUACaaacuUCC-CGACCGCc -3'
miRNA:   3'- gaaugCGCUGAUGc----AGGuGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 41942 0.66 0.850367
Target:  5'- aCUUGCaGCGGacagggCCGCGACUGCGc -3'
miRNA:   3'- -GAAUG-CGCUgaugcaGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 17028 0.66 0.841828
Target:  5'- ---cCGCGACcgaGCGUCUGCGcCCGuCGa -3'
miRNA:   3'- gaauGCGCUGa--UGCAGGUGCuGGC-GC- -5'
16501 3' -53.9 NC_004084.1 + 30625 0.66 0.841828
Target:  5'- --gACGcCGACUACGagUUCGCGACgaCGCu -3'
miRNA:   3'- gaaUGC-GCUGAUGC--AGGUGCUG--GCGc -5'
16501 3' -53.9 NC_004084.1 + 32249 0.66 0.841828
Target:  5'- -gUugG-GACUACGUUCucguCGACUGCc -3'
miRNA:   3'- gaAugCgCUGAUGCAGGu---GCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 47236 0.66 0.841828
Target:  5'- --cACGCuGCUuCGaCCGCGAUCGUGa -3'
miRNA:   3'- gaaUGCGcUGAuGCaGGUGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 14670 0.66 0.833072
Target:  5'- ---cCGCGA--GCGUCC-CGGCCGgGu -3'
miRNA:   3'- gaauGCGCUgaUGCAGGuGCUGGCgC- -5'
16501 3' -53.9 NC_004084.1 + 38391 0.66 0.833072
Target:  5'- --gACGCGAUcguCGUCCuCGAgCGCc -3'
miRNA:   3'- gaaUGCGCUGau-GCAGGuGCUgGCGc -5'
16501 3' -53.9 NC_004084.1 + 47187 0.66 0.833072
Target:  5'- -cUugGUGAgUUGCGUCaCGCGAgcCUGCGg -3'
miRNA:   3'- gaAugCGCU-GAUGCAG-GUGCU--GGCGC- -5'
16501 3' -53.9 NC_004084.1 + 21436 0.66 0.824108
Target:  5'- ---uCGUGAggAUGUCCGCGAgCGCc -3'
miRNA:   3'- gaauGCGCUgaUGCAGGUGCUgGCGc -5'
16501 3' -53.9 NC_004084.1 + 34581 0.66 0.814946
Target:  5'- --gGCgGCGACUGCcUCCaucGCGACgGUGg -3'
miRNA:   3'- gaaUG-CGCUGAUGcAGG---UGCUGgCGC- -5'
16501 3' -53.9 NC_004084.1 + 56838 0.66 0.805596
Target:  5'- --cGgGCGACguCGUCCugGACCcguucGCGg -3'
miRNA:   3'- gaaUgCGCUGauGCAGGugCUGG-----CGC- -5'
16501 3' -53.9 NC_004084.1 + 53355 0.67 0.776514
Target:  5'- -cUGCGuCGuCUAC-UCCGcCGACCGCu -3'
miRNA:   3'- gaAUGC-GCuGAUGcAGGU-GCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26626 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26596 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 26566 0.67 0.776514
Target:  5'- --gACGU-ACUuaccGCGUCCAUGGCCGUc -3'
miRNA:   3'- gaaUGCGcUGA----UGCAGGUGCUGGCGc -5'
16501 3' -53.9 NC_004084.1 + 1989 0.67 0.776514
Target:  5'- --gAUGCaGACUACGUCguCGAggaCGCGa -3'
miRNA:   3'- gaaUGCG-CUGAUGCAGguGCUg--GCGC- -5'
16501 3' -53.9 NC_004084.1 + 30138 0.68 0.745081
Target:  5'- --cGCGaGACUccCGUCCACGagucgaaGCCGCGa -3'
miRNA:   3'- gaaUGCgCUGAu-GCAGGUGC-------UGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 53301 0.68 0.714691
Target:  5'- ---cCGCGAgUACGUugaCCcgGCGAUCGCGg -3'
miRNA:   3'- gaauGCGCUgAUGCA---GG--UGCUGGCGC- -5'
16501 3' -53.9 NC_004084.1 + 27144 0.68 0.714691
Target:  5'- ---cCGCGACcggccACGUUCGagcuCGACCGCGg -3'
miRNA:   3'- gaauGCGCUGa----UGCAGGU----GCUGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.