Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16501 | 3' | -53.9 | NC_004084.1 | + | 57228 | 1.09 | 0.001952 |
Target: 5'- gCUUACGCGACUACGUCCACGACCGCGu -3' miRNA: 3'- -GAAUGCGCUGAUGCAGGUGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 56838 | 0.66 | 0.805596 |
Target: 5'- --cGgGCGACguCGUCCugGACCcguucGCGg -3' miRNA: 3'- gaaUgCGCUGauGCAGGugCUGG-----CGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 53355 | 0.67 | 0.776514 |
Target: 5'- -cUGCGuCGuCUAC-UCCGcCGACCGCu -3' miRNA: 3'- gaAUGC-GCuGAUGcAGGU-GCUGGCGc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 53301 | 0.68 | 0.714691 |
Target: 5'- ---cCGCGAgUACGUugaCCcgGCGAUCGCGg -3' miRNA: 3'- gaauGCGCUgAUGCA---GG--UGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 52162 | 0.69 | 0.671725 |
Target: 5'- --gACGcCGACcACGUCgACGaACCGCu -3' miRNA: 3'- gaaUGC-GCUGaUGCAGgUGC-UGGCGc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 51437 | 0.69 | 0.682548 |
Target: 5'- --cACGCuGAuCUACGUUgGCGaggGCCGCGg -3' miRNA: 3'- gaaUGCG-CU-GAUGCAGgUGC---UGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 47901 | 0.72 | 0.46959 |
Target: 5'- --aACGCGACgguCGcUCCGCGagguGCCGCGc -3' miRNA: 3'- gaaUGCGCUGau-GC-AGGUGC----UGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 47236 | 0.66 | 0.841828 |
Target: 5'- --cACGCuGCUuCGaCCGCGAUCGUGa -3' miRNA: 3'- gaaUGCGcUGAuGCaGGUGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 47187 | 0.66 | 0.833072 |
Target: 5'- -cUugGUGAgUUGCGUCaCGCGAgcCUGCGg -3' miRNA: 3'- gaAugCGCU-GAUGCAG-GUGCU--GGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 44405 | 0.69 | 0.681468 |
Target: 5'- --aGCGCGGCUGgcucggcaaccCGUUccgaacggacgagCACGGCCGCGu -3' miRNA: 3'- gaaUGCGCUGAU-----------GCAG-------------GUGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 41942 | 0.66 | 0.850367 |
Target: 5'- aCUUGCaGCGGacagggCCGCGACUGCGc -3' miRNA: 3'- -GAAUG-CGCUgaugcaGGUGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 41879 | 0.76 | 0.281255 |
Target: 5'- -cUGCGCGaACUGCGaggaggUCCacgACGACCGCGg -3' miRNA: 3'- gaAUGCGC-UGAUGC------AGG---UGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 38444 | 0.71 | 0.531203 |
Target: 5'- --cGCGCGACgucgACGUcgucaaCCACGGCCGg- -3' miRNA: 3'- gaaUGCGCUGa---UGCA------GGUGCUGGCgc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 38391 | 0.66 | 0.833072 |
Target: 5'- --gACGCGAUcguCGUCCuCGAgCGCc -3' miRNA: 3'- gaaUGCGCUGau-GCAGGuGCUgGCGc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 34581 | 0.66 | 0.814946 |
Target: 5'- --gGCgGCGACUGCcUCCaucGCGACgGUGg -3' miRNA: 3'- gaaUG-CGCUGAUGcAGG---UGCUGgCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 32249 | 0.66 | 0.841828 |
Target: 5'- -gUugG-GACUACGUUCucguCGACUGCc -3' miRNA: 3'- gaAugCgCUGAUGCAGGu---GCUGGCGc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 30625 | 0.66 | 0.841828 |
Target: 5'- --gACGcCGACUACGagUUCGCGACgaCGCu -3' miRNA: 3'- gaaUGC-GCUGAUGC--AGGUGCUG--GCGc -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 30138 | 0.68 | 0.745081 |
Target: 5'- --cGCGaGACUccCGUCCACGagucgaaGCCGCGa -3' miRNA: 3'- gaaUGCgCUGAu-GCAGGUGC-------UGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 29631 | 0.7 | 0.606372 |
Target: 5'- --gGCuGuCGGCUccggACGUCgACGACCGCGc -3' miRNA: 3'- gaaUG-C-GCUGA----UGCAGgUGCUGGCGC- -5' |
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16501 | 3' | -53.9 | NC_004084.1 | + | 28984 | 0.75 | 0.333978 |
Target: 5'- --cGCGCGACcgACGUCgGCcugauGACCGCGa -3' miRNA: 3'- gaaUGCGCUGa-UGCAGgUG-----CUGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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