miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 3' -59.1 NC_004084.1 + 57408 1.09 0.000595
Target:  5'- gCGUCGACGUCGCCGGCGAGCUCGAGGu -3'
miRNA:   3'- -GCAGCUGCAGCGGCCGCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 18147 0.82 0.057593
Target:  5'- --aCGACGUCGCCGGCGAGUggaCGAuGGa -3'
miRNA:   3'- gcaGCUGCAGCGGCCGCUCGa--GCU-CC- -5'
16502 3' -59.1 NC_004084.1 + 10531 0.8 0.075573
Target:  5'- cCGUCGACGUUGCCGagccaGCGgacgaguAGCUCGGGGu -3'
miRNA:   3'- -GCAGCUGCAGCGGC-----CGC-------UCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 11724 0.8 0.07578
Target:  5'- gGUaGACGUCGCCGGCGAcguGCUCGAa- -3'
miRNA:   3'- gCAgCUGCAGCGGCCGCU---CGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 31203 0.79 0.102112
Target:  5'- gCGUCGACGUCGUC-GCGAacCUCGAGGu -3'
miRNA:   3'- -GCAGCUGCAGCGGcCGCUc-GAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 47378 0.79 0.102112
Target:  5'- uCGUCcGCGUCGUcgaCGGCGAGCUCcAGGg -3'
miRNA:   3'- -GCAGcUGCAGCG---GCCGCUCGAGcUCC- -5'
16502 3' -59.1 NC_004084.1 + 26195 0.78 0.11675
Target:  5'- cCGUCGGCGUCGUCGaG-GAGCaucUCGAGGc -3'
miRNA:   3'- -GCAGCUGCAGCGGC-CgCUCG---AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 5689 0.78 0.11675
Target:  5'- uCGUCGAgGUcCGCUGGguUGAGUUCGAGGa -3'
miRNA:   3'- -GCAGCUgCA-GCGGCC--GCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 23062 0.78 0.11675
Target:  5'- uCG-CGAuCGUCGCCGGCGAcGCgaCGAGGu -3'
miRNA:   3'- -GCaGCU-GCAGCGGCCGCU-CGa-GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 30929 0.78 0.119904
Target:  5'- aCGUCGAuCGcUCGUCGacguCGAGCUCGAGGa -3'
miRNA:   3'- -GCAGCU-GC-AGCGGCc---GCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 11654 0.77 0.126451
Target:  5'- aCGUCGACGUCgGUCGGCGAcGacuacggCGAGGa -3'
miRNA:   3'- -GCAGCUGCAG-CGGCCGCU-Cga-----GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 49849 0.77 0.136893
Target:  5'- uCGUCGACGUCGCgagcgagaucCGGCGAGUccugCGGGa -3'
miRNA:   3'- -GCAGCUGCAGCG----------GCCGCUCGa---GCUCc -5'
16502 3' -59.1 NC_004084.1 + 5338 0.76 0.144288
Target:  5'- -aUC-ACGUCGCCGaGCGGGCggCGAGGa -3'
miRNA:   3'- gcAGcUGCAGCGGC-CGCUCGa-GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 22072 0.76 0.152048
Target:  5'- cCGuUCGAUGUCGuuGGUGAGUUCGAc- -3'
miRNA:   3'- -GC-AGCUGCAGCggCCGCUCGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 3086 0.76 0.153644
Target:  5'- uCGUCGACGUgCGuuCCGGCGGGCUccucauccacgaguaCGGGGc -3'
miRNA:   3'- -GCAGCUGCA-GC--GGCCGCUCGA---------------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 34711 0.76 0.159353
Target:  5'- uCGUCcuuuccgGGCGUCGCCGGUucgcgauGAGCUCGcGGa -3'
miRNA:   3'- -GCAG-------CUGCAGCGGCCG-------CUCGAGCuCC- -5'
16502 3' -59.1 NC_004084.1 + 23362 0.75 0.164397
Target:  5'- gGUCGACGUCGacguucggauCCGucGCGAGCcacUCGAGGa -3'
miRNA:   3'- gCAGCUGCAGC----------GGC--CGCUCG---AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 54239 0.75 0.164397
Target:  5'- aCGUCGgagcgaucaGCGcCGUCGGCGAGgUUGAGGu -3'
miRNA:   3'- -GCAGC---------UGCaGCGGCCGCUCgAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 30112 0.75 0.173124
Target:  5'- ---gGACGUCGCUGGgGAGCgggcCGGGGa -3'
miRNA:   3'- gcagCUGCAGCGGCCgCUCGa---GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 19982 0.75 0.186989
Target:  5'- aCGUCGACGUCGC--GCGuucGCUCGAGu -3'
miRNA:   3'- -GCAGCUGCAGCGgcCGCu--CGAGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.