miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 3' -59.1 NC_004084.1 + 38450 0.7 0.376118
Target:  5'- aCGUCGACGUCGUcaaccaCGGCcGGCUCu--- -3'
miRNA:   3'- -GCAGCUGCAGCG------GCCGcUCGAGcucc -5'
16502 3' -59.1 NC_004084.1 + 35353 0.72 0.285031
Target:  5'- uCGUCG-CGUCGCCGGCGAcGaucgCGAa- -3'
miRNA:   3'- -GCAGCuGCAGCGGCCGCU-Cga--GCUcc -5'
16502 3' -59.1 NC_004084.1 + 29222 0.71 0.306055
Target:  5'- gCGUCGACGuuguUCGCgGGCGAGUacUCGucGc -3'
miRNA:   3'- -GCAGCUGC----AGCGgCCGCUCG--AGCucC- -5'
16502 3' -59.1 NC_004084.1 + 20864 0.71 0.313322
Target:  5'- aCGUCGAcCG-CGCCGGCGAuggaaUCGAGc -3'
miRNA:   3'- -GCAGCU-GCaGCGGCCGCUcg---AGCUCc -5'
16502 3' -59.1 NC_004084.1 + 17982 0.71 0.316265
Target:  5'- uCGUCGGCG-CGCUGuCGAGCguucgugaaggucucUCGGGGg -3'
miRNA:   3'- -GCAGCUGCaGCGGCcGCUCG---------------AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 17388 0.71 0.320719
Target:  5'- uGagGAUcUCGCCGGCaGAGUgaUCGAGGa -3'
miRNA:   3'- gCagCUGcAGCGGCCG-CUCG--AGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 17156 0.7 0.359648
Target:  5'- uGggGACGaUCGCCGGCGAcGUcgaaggCGAGGg -3'
miRNA:   3'- gCagCUGC-AGCGGCCGCU-CGa-----GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 52588 0.7 0.359648
Target:  5'- gCGgCGGCGUgGuCCGGUGGG-UCGAGGc -3'
miRNA:   3'- -GCaGCUGCAgC-GGCCGCUCgAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 3776 0.7 0.376118
Target:  5'- -uUCGGCGUCGCUGGCGA--UCGGu- -3'
miRNA:   3'- gcAGCUGCAGCGGCCGCUcgAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 47466 0.73 0.246435
Target:  5'- gGUCGAUGUCGaCCGG-GAcuggcuGUUCGAGGu -3'
miRNA:   3'- gCAGCUGCAGC-GGCCgCU------CGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 31945 0.74 0.191824
Target:  5'- -cUCaACGUCGCCGGCGcgcucaaccAGCUCGGGa -3'
miRNA:   3'- gcAGcUGCAGCGGCCGC---------UCGAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 30112 0.75 0.173124
Target:  5'- ---gGACGUCGCUGGgGAGCgggcCGGGGa -3'
miRNA:   3'- gcagCUGCAGCGGCCgCUCGa---GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 18147 0.82 0.057593
Target:  5'- --aCGACGUCGCCGGCGAGUggaCGAuGGa -3'
miRNA:   3'- gcaGCUGCAGCGGCCGCUCGa--GCU-CC- -5'
16502 3' -59.1 NC_004084.1 + 31203 0.79 0.102112
Target:  5'- gCGUCGACGUCGUC-GCGAacCUCGAGGu -3'
miRNA:   3'- -GCAGCUGCAGCGGcCGCUc-GAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 47378 0.79 0.102112
Target:  5'- uCGUCcGCGUCGUcgaCGGCGAGCUCcAGGg -3'
miRNA:   3'- -GCAGcUGCAGCG---GCCGCUCGAGcUCC- -5'
16502 3' -59.1 NC_004084.1 + 11654 0.77 0.126451
Target:  5'- aCGUCGACGUCgGUCGGCGAcGacuacggCGAGGa -3'
miRNA:   3'- -GCAGCUGCAG-CGGCCGCU-Cga-----GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 49849 0.77 0.136893
Target:  5'- uCGUCGACGUCGCgagcgagaucCGGCGAGUccugCGGGa -3'
miRNA:   3'- -GCAGCUGCAGCG----------GCCGCUCGa---GCUCc -5'
16502 3' -59.1 NC_004084.1 + 5338 0.76 0.144288
Target:  5'- -aUC-ACGUCGCCGaGCGGGCggCGAGGa -3'
miRNA:   3'- gcAGcUGCAGCGGC-CGCUCGa-GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 3086 0.76 0.153644
Target:  5'- uCGUCGACGUgCGuuCCGGCGGGCUccucauccacgaguaCGGGGc -3'
miRNA:   3'- -GCAGCUGCA-GC--GGCCGCUCGA---------------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 34711 0.76 0.159353
Target:  5'- uCGUCcuuuccgGGCGUCGCCGGUucgcgauGAGCUCGcGGa -3'
miRNA:   3'- -GCAG-------CUGCAGCGGCCG-------CUCGAGCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.