miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16502 3' -59.1 NC_004084.1 + 213 0.67 0.52544
Target:  5'- aGUUGACccagcgaaGUCGaCCGGCGAGCgaugcacgcagccggCGaAGGg -3'
miRNA:   3'- gCAGCUG--------CAGC-GGCCGCUCGa--------------GC-UCC- -5'
16502 3' -59.1 NC_004084.1 + 875 0.7 0.343689
Target:  5'- uCGUCGACGUCGCCGuCGGaaUCGGu- -3'
miRNA:   3'- -GCAGCUGCAGCGGCcGCUcgAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 906 0.67 0.514432
Target:  5'- uGUCGGCGUCGUCGG--AGUUCGcugcGGc -3'
miRNA:   3'- gCAGCUGCAGCGGCCgcUCGAGCu---CC- -5'
16502 3' -59.1 NC_004084.1 + 975 0.68 0.475255
Target:  5'- gGUCGGUGUCGCU---GAGUUCGAGGu -3'
miRNA:   3'- gCAGCUGCAGCGGccgCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 1024 0.71 0.328246
Target:  5'- aCGUCGACGcgaUCGggGGCGcGCUCGAGu -3'
miRNA:   3'- -GCAGCUGC---AGCggCCGCuCGAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 1497 0.71 0.298918
Target:  5'- gGUaGACGUCGCCcuCGAGCUCGAa- -3'
miRNA:   3'- gCAgCUGCAGCGGccGCUCGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 1592 0.68 0.446873
Target:  5'- --aCGACGUCGcCCGGCuggGAGCUCu--- -3'
miRNA:   3'- gcaGCUGCAGC-GGCCG---CUCGAGcucc -5'
16502 3' -59.1 NC_004084.1 + 2045 0.68 0.494667
Target:  5'- gGUCGAUGUCgauGCCGuacgguggauccGUGAGgaCGAGGu -3'
miRNA:   3'- gCAGCUGCAG---CGGC------------CGCUCgaGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 2150 0.67 0.534512
Target:  5'- gGUCGACGUCGUacucguaGGCGAcaccaGCaCGGGa -3'
miRNA:   3'- gCAGCUGCAGCGg------CCGCU-----CGaGCUCc -5'
16502 3' -59.1 NC_004084.1 + 3086 0.76 0.153644
Target:  5'- uCGUCGACGUgCGuuCCGGCGGGCUccucauccacgaguaCGGGGc -3'
miRNA:   3'- -GCAGCUGCA-GC--GGCCGCUCGA---------------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 3170 0.66 0.575431
Target:  5'- cCGUaGACGUCGUcgaCGGCGAGgacgugaaCGAGGc -3'
miRNA:   3'- -GCAgCUGCAGCG---GCCGCUCga------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 3776 0.7 0.376118
Target:  5'- -uUCGGCGUCGCUGGCGA--UCGGu- -3'
miRNA:   3'- gcAGCUGCAGCGGCCGCUcgAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 4935 0.67 0.553837
Target:  5'- cCGUCGACGUacuggaugacgucCGCCGG-GAGaCgacgacccaCGAGGa -3'
miRNA:   3'- -GCAGCUGCA-------------GCGGCCgCUC-Ga--------GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 5338 0.76 0.144288
Target:  5'- -aUC-ACGUCGCCGaGCGGGCggCGAGGa -3'
miRNA:   3'- gcAGcUGCAGCGGC-CGCUCGa-GCUCC- -5'
16502 3' -59.1 NC_004084.1 + 5572 0.66 0.565121
Target:  5'- uGUCGAgGUCGCCaGCGccgaacGC-CGAGa -3'
miRNA:   3'- gCAGCUgCAGCGGcCGCu-----CGaGCUCc -5'
16502 3' -59.1 NC_004084.1 + 5689 0.78 0.11675
Target:  5'- uCGUCGAgGUcCGCUGGguUGAGUUCGAGGa -3'
miRNA:   3'- -GCAGCUgCA-GCGGCC--GCUCGAGCUCC- -5'
16502 3' -59.1 NC_004084.1 + 6297 0.68 0.465692
Target:  5'- aGUCGGCGUaacCGCCGuGCuGGUagGGGGa -3'
miRNA:   3'- gCAGCUGCA---GCGGC-CGcUCGagCUCC- -5'
16502 3' -59.1 NC_004084.1 + 7080 0.66 0.585782
Target:  5'- cCGUCGACGaagaucUCGCgGGCGcaCUCGAu- -3'
miRNA:   3'- -GCAGCUGC------AGCGgCCGCucGAGCUcc -5'
16502 3' -59.1 NC_004084.1 + 8326 0.69 0.408782
Target:  5'- gCGUCGGCGcggaugauccaGCCGGCGuuUUCGAGa -3'
miRNA:   3'- -GCAGCUGCag---------CGGCCGCucGAGCUCc -5'
16502 3' -59.1 NC_004084.1 + 8740 0.67 0.542621
Target:  5'- uCGUgGAUGUCGCCGGUccauucggagaucauGucgaccaccgcccacAGCUCGAGc -3'
miRNA:   3'- -GCAgCUGCAGCGGCCG---------------C---------------UCGAGCUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.