Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16503 | 3' | -58.9 | NC_004084.1 | + | 57671 | 0.66 | 0.52572 |
Target: 5'- uGguGGUC-CAGCGc-CUCCGACGuCg -3' miRNA: 3'- uCguCCGGcGUCGCuuGAGGCUGCuG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 57529 | 0.69 | 0.348082 |
Target: 5'- ----cGCCGaCAGCGAuaccgAUUCCGACGGCg -3' miRNA: 3'- ucgucCGGC-GUCGCU-----UGAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 57503 | 1.1 | 0.000404 |
Target: 5'- cAGCAGGCCGCAGCGAACUCCGACGACg -3' miRNA: 3'- -UCGUCCGGCGUCGCUUGAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 56196 | 0.71 | 0.273346 |
Target: 5'- cGCuGGCCGaAGCGAGCggCGAgGACa -3' miRNA: 3'- uCGuCCGGCgUCGCUUGagGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 55554 | 0.68 | 0.381808 |
Target: 5'- uGGCuGGCCGCGaCGAACU-CGuCGGCc -3' miRNA: 3'- -UCGuCCGGCGUcGCUUGAgGCuGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 54130 | 0.66 | 0.546569 |
Target: 5'- cGGCGGGaCGUcGUGGACUuuGAgGAUg -3' miRNA: 3'- -UCGUCCgGCGuCGCUUGAggCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 52030 | 0.7 | 0.287195 |
Target: 5'- gAGCAGGCUG-AGCGAGCggUCuACGGCg -3' miRNA: 3'- -UCGUCCGGCgUCGCUUGa-GGcUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 51752 | 0.67 | 0.484989 |
Target: 5'- gAGCAGcGCCGaAGCGA-CUUCuACGGCc -3' miRNA: 3'- -UCGUC-CGGCgUCGCUuGAGGcUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 51452 | 0.74 | 0.162934 |
Target: 5'- uGGCgaGGGCCGCGGCGGcuguACgggCGACGACc -3' miRNA: 3'- -UCG--UCCGGCGUCGCU----UGag-GCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 49342 | 0.66 | 0.495037 |
Target: 5'- cGGCGuaCCGCGGCGAuCUCCGAaCGu- -3' miRNA: 3'- -UCGUccGGCGUCGCUuGAGGCU-GCug -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 47383 | 0.68 | 0.380939 |
Target: 5'- cGCGucGUCGaCGGCGAGCUCCagggcgcGACGACg -3' miRNA: 3'- uCGUc-CGGC-GUCGCUUGAGG-------CUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 45509 | 0.69 | 0.348082 |
Target: 5'- uGGcCGGGCCGguCGGCc-ACUCCGAgGACg -3' miRNA: 3'- -UC-GUCCGGC--GUCGcuUGAGGCUgCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 43768 | 0.68 | 0.396787 |
Target: 5'- cGCGGGCaucgacugggcgcuCGcCGGCGGAgagUCCGGCGGCg -3' miRNA: 3'- uCGUCCG--------------GC-GUCGCUUg--AGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 42686 | 0.69 | 0.373175 |
Target: 5'- cGCgAGGCUGcCAGCGAucACcgaugCUGACGACc -3' miRNA: 3'- uCG-UCCGGC-GUCGCU--UGa----GGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 42648 | 0.67 | 0.484989 |
Target: 5'- -cCAGuCgGCGGCGcAgUCCGACGACg -3' miRNA: 3'- ucGUCcGgCGUCGCuUgAGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 40446 | 0.68 | 0.381808 |
Target: 5'- --gAGGCCGagGGCG-ACaCCGACGACg -3' miRNA: 3'- ucgUCCGGCg-UCGCuUGaGGCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 37374 | 0.66 | 0.505178 |
Target: 5'- cGguGGCCGCcu--GACUUCGACGAa -3' miRNA: 3'- uCguCCGGCGucgcUUGAGGCUGCUg -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 36883 | 0.66 | 0.52572 |
Target: 5'- -aCGGGCCuccucaagcuCGGCGAACUC-GGCGGCg -3' miRNA: 3'- ucGUCCGGc---------GUCGCUUGAGgCUGCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 35474 | 0.68 | 0.408493 |
Target: 5'- gAGCAGGUCgagGCGGCGAucgCCGAgauccCGACc -3' miRNA: 3'- -UCGUCCGG---CGUCGCUugaGGCU-----GCUG- -5' |
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16503 | 3' | -58.9 | NC_004084.1 | + | 35184 | 0.66 | 0.515408 |
Target: 5'- cGGUccGGGCCGCu-CGAGCUCCucCGAa -3' miRNA: 3'- -UCG--UCCGGCGucGCUUGAGGcuGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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