miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16503 3' -58.9 NC_004084.1 + 54130 0.66 0.546569
Target:  5'- cGGCGGGaCGUcGUGGACUuuGAgGAUg -3'
miRNA:   3'- -UCGUCCgGCGuCGCUUGAggCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 27785 0.68 0.408493
Target:  5'- cAGCAGcGUCGUcGCGAACUCguaGuCGGCg -3'
miRNA:   3'- -UCGUC-CGGCGuCGCUUGAGg--CuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 31461 0.67 0.465194
Target:  5'- cAGCGGGCaauggauGCGGUGAGCgcguccgCCGucGCGAUg -3'
miRNA:   3'- -UCGUCCGg------CGUCGCUUGa------GGC--UGCUG- -5'
16503 3' -58.9 NC_004084.1 + 355 0.67 0.47504
Target:  5'- cAGguGGCCucucgaaacuguGCcGCGAGC-CCGGgGACg -3'
miRNA:   3'- -UCguCCGG------------CGuCGCUUGaGGCUgCUG- -5'
16503 3' -58.9 NC_004084.1 + 28670 0.66 0.505178
Target:  5'- ----cGCCGCAGCGAGCUCaaCGuCGAg -3'
miRNA:   3'- ucgucCGGCGUCGCUUGAG--GCuGCUg -5'
16503 3' -58.9 NC_004084.1 + 23129 0.66 0.515408
Target:  5'- cAGCAGGCucuCGC-GCuGACUUCGcCGACu -3'
miRNA:   3'- -UCGUCCG---GCGuCGcUUGAGGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 42686 0.69 0.373175
Target:  5'- cGCgAGGCUGcCAGCGAucACcgaugCUGACGACc -3'
miRNA:   3'- uCG-UCCGGC-GUCGCU--UGa----GGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 33505 0.67 0.436313
Target:  5'- cGguGGCCGaacgaAGCGAGCUCUacuCGAg -3'
miRNA:   3'- uCguCCGGCg----UCGCUUGAGGcu-GCUg -5'
16503 3' -58.9 NC_004084.1 + 28532 0.67 0.484989
Target:  5'- uGCGuGGCCGgGGaCGu-CUuuGACGACg -3'
miRNA:   3'- uCGU-CCGGCgUC-GCuuGAggCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 6658 0.66 0.52572
Target:  5'- uGuCAGGCCGUagaagucgcuucGGCGcuGCUC-GACGACg -3'
miRNA:   3'- uC-GUCCGGCG------------UCGCu-UGAGgCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 36883 0.66 0.52572
Target:  5'- -aCGGGCCuccucaagcuCGGCGAACUC-GGCGGCg -3'
miRNA:   3'- ucGUCCGGc---------GUCGCUUGAGgCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 12836 0.7 0.316536
Target:  5'- gAGCGGGuuGUugaacGCGAAC-CCGuCGGCg -3'
miRNA:   3'- -UCGUCCggCGu----CGCUUGaGGCuGCUG- -5'
16503 3' -58.9 NC_004084.1 + 57671 0.66 0.52572
Target:  5'- uGguGGUC-CAGCGc-CUCCGACGuCg -3'
miRNA:   3'- uCguCCGGcGUCGCuuGAGGCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 7170 0.67 0.445827
Target:  5'- gGGUcGGUCGCAGCGA--UCCgGACGuCg -3'
miRNA:   3'- -UCGuCCGGCGUCGCUugAGG-CUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 31705 0.7 0.316536
Target:  5'- gAGCGGGCCuCAGCGGcuaugACUacgccgauaUCGACGAUg -3'
miRNA:   3'- -UCGUCCGGcGUCGCU-----UGA---------GGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 7359 0.68 0.381808
Target:  5'- cAGgAGG-CGCGGUucGCUCCGACGGu -3'
miRNA:   3'- -UCgUCCgGCGUCGcuUGAGGCUGCUg -5'
16503 3' -58.9 NC_004084.1 + 23659 0.69 0.364675
Target:  5'- cGGCAauGGaCGCGGUGAgcgACUCCcaGACGGCa -3'
miRNA:   3'- -UCGU--CCgGCGUCGCU---UGAGG--CUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 21681 0.69 0.364675
Target:  5'- uGCAGGuuGCGuuGCGAGCacagCUGACGuCg -3'
miRNA:   3'- uCGUCCggCGU--CGCUUGa---GGCUGCuG- -5'
16503 3' -58.9 NC_004084.1 + 57529 0.69 0.348082
Target:  5'- ----cGCCGaCAGCGAuaccgAUUCCGACGGCg -3'
miRNA:   3'- ucgucCGGC-GUCGCU-----UGAGGCUGCUG- -5'
16503 3' -58.9 NC_004084.1 + 45509 0.69 0.348082
Target:  5'- uGGcCGGGCCGguCGGCc-ACUCCGAgGACg -3'
miRNA:   3'- -UC-GUCCGGC--GUCGcuUGAGGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.