Results 21 - 40 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16505 | 5' | -49.5 | NC_004084.1 | + | 16570 | 0.71 | 0.761342 |
Target: 5'- gCCGAucGGUGCCGcuuuccuacucgucgGAGCGGCGACu -3' miRNA: 3'- aGGCUuuUCGUGGCua-------------CUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 56419 | 0.71 | 0.770779 |
Target: 5'- aUCCGuucagcacagcGGCACCGucgcGAACGACGAUc -3' miRNA: 3'- -AGGCuuu--------UCGUGGCua--CUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1805 | 0.71 | 0.774934 |
Target: 5'- aUCCGGcgAAcuCGCCGAccGGCGACGACg -3' miRNA: 3'- -AGGCU--UUucGUGGCUacUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 11774 | 0.71 | 0.774934 |
Target: 5'- aCCGAGGAGgaACUGAgcGAUGGCGACa -3' miRNA: 3'- aGGCUUUUCg-UGGCUacUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 12571 | 0.71 | 0.78521 |
Target: 5'- aCCGAAGacgGGCAagCGAUGAuCGAgGACg -3' miRNA: 3'- aGGCUUU---UCGUg-GCUACUuGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 2774 | 0.71 | 0.805243 |
Target: 5'- -gUGGAgcGCGCCGAUGggUGA-GACg -3' miRNA: 3'- agGCUUuuCGUGGCUACuuGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 39702 | 0.71 | 0.805243 |
Target: 5'- aCCGAAcc-CGCCaGUGAcgGCGACGACg -3' miRNA: 3'- aGGCUUuucGUGGcUACU--UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 8934 | 0.7 | 0.814976 |
Target: 5'- aUCCGGAugaCGCCGAcGAcuccgaggacaGCGGCGACg -3' miRNA: 3'- -AGGCUUuucGUGGCUaCU-----------UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 48875 | 0.7 | 0.814976 |
Target: 5'- cCCGggGcucGCGaCGAUGcACGACGGCa -3' miRNA: 3'- aGGCuuUu--CGUgGCUACuUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 2475 | 0.7 | 0.824504 |
Target: 5'- cCCGGGAAGguccCCGGUGuucGCGACGAUc -3' miRNA: 3'- aGGCUUUUCgu--GGCUACu--UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 39129 | 0.7 | 0.828256 |
Target: 5'- cCCGGAGAGC-CUGAaGuauaaagcucgcgagGGCGACGACg -3' miRNA: 3'- aGGCUUUUCGuGGCUaC---------------UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 39191 | 0.7 | 0.842905 |
Target: 5'- --aGggGugccAGgGCCGAUGAcgcACGGCGACa -3' miRNA: 3'- aggCuuU----UCgUGGCUACU---UGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 7540 | 0.7 | 0.842905 |
Target: 5'- cUCCGGAuuuAGGUcuacGCCGAUGAACcGuCGGCc -3' miRNA: 3'- -AGGCUU---UUCG----UGGCUACUUG-CuGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 46629 | 0.7 | 0.851758 |
Target: 5'- aCCGcAGAGGCuuCCGGUGGccCGACGAg -3' miRNA: 3'- aGGC-UUUUCGu-GGCUACUu-GCUGCUg -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 32208 | 0.7 | 0.851758 |
Target: 5'- --aGAGGAGCGCCucgaGAUGcuccuCGACGACg -3' miRNA: 3'- aggCUUUUCGUGG----CUACuu---GCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 10410 | 0.69 | 0.860365 |
Target: 5'- cUCCGcGAGGUggACUGAUGGuCGAgGACg -3' miRNA: 3'- -AGGCuUUUCG--UGGCUACUuGCUgCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5163 | 0.69 | 0.860365 |
Target: 5'- cCUGAGGcAGCACuCGAgucGAuCGACGACu -3' miRNA: 3'- aGGCUUU-UCGUG-GCUa--CUuGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 1670 | 0.69 | 0.868719 |
Target: 5'- cCCGAcgucGAGUGCUuGUGGACGAUGAUg -3' miRNA: 3'- aGGCUu---UUCGUGGcUACUUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 57530 | 0.69 | 0.884636 |
Target: 5'- gCCGAc-AGCgauACCGAUuccGACGGCGACg -3' miRNA: 3'- aGGCUuuUCG---UGGCUAc--UUGCUGCUG- -5' |
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16505 | 5' | -49.5 | NC_004084.1 | + | 5013 | 0.69 | 0.892185 |
Target: 5'- aUCCGAGAggggaucaacgGGCugAUCGA-GGAUGGCGACu -3' miRNA: 3'- -AGGCUUU-----------UCG--UGGCUaCUUGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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