miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16647 3' -52 NC_004156.1 + 216708 0.66 0.995678
Target:  5'- -cUUCGGUGCUCGUAC-CCAAACc-- -3'
miRNA:   3'- acGGGUCAUGAGCAUGuGGUUUGcgu -5'
16647 3' -52 NC_004156.1 + 198225 0.66 0.994977
Target:  5'- gUGUCCAGU-CUCGUugG-CAGAgGCu -3'
miRNA:   3'- -ACGGGUCAuGAGCAugUgGUUUgCGu -5'
16647 3' -52 NC_004156.1 + 44957 0.66 0.994186
Target:  5'- cGCCUGGUACg---GCACCGGuCGCc -3'
miRNA:   3'- aCGGGUCAUGagcaUGUGGUUuGCGu -5'
16647 3' -52 NC_004156.1 + 158390 0.66 0.993297
Target:  5'- aGUCCAGUguauagACguugUGUGUACCGAAUGCAa -3'
miRNA:   3'- aCGGGUCA------UGa---GCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 95069 0.66 0.993297
Target:  5'- aGCCCAGUAC-CGUugcagaggcCAUCAAACuGUAc -3'
miRNA:   3'- aCGGGUCAUGaGCAu--------GUGGUUUG-CGU- -5'
16647 3' -52 NC_004156.1 + 11305 0.66 0.993297
Target:  5'- cUGCaCCGGagaggGUGCAUCAAACGCAu -3'
miRNA:   3'- -ACG-GGUCaugagCAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 40614 0.66 0.993297
Target:  5'- cGUCCgAGUAgaUCGUcuACACCAAACGa- -3'
miRNA:   3'- aCGGG-UCAUg-AGCA--UGUGGUUUGCgu -5'
16647 3' -52 NC_004156.1 + 163593 0.66 0.993297
Target:  5'- gGCUCAGUuuuACUCGUACG---AugGCAa -3'
miRNA:   3'- aCGGGUCA---UGAGCAUGUgguUugCGU- -5'
16647 3' -52 NC_004156.1 + 109078 0.66 0.992198
Target:  5'- aGUgUAGUGCUCacaccggucaagaGUACAUUGGACGCAu -3'
miRNA:   3'- aCGgGUCAUGAG-------------CAUGUGGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 22601 0.67 0.991195
Target:  5'- gUGCUCGGUGCUUGUAguuuguagcUugUAGAUGUAg -3'
miRNA:   3'- -ACGGGUCAUGAGCAU---------GugGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 21420 0.67 0.991195
Target:  5'- gGCgCuGUACaaggagCGUACACCaAAGCGCu -3'
miRNA:   3'- aCGgGuCAUGa-----GCAUGUGG-UUUGCGu -5'
16647 3' -52 NC_004156.1 + 140417 0.67 0.988605
Target:  5'- aGCCCA-----UGUGCACgGGACGCAa -3'
miRNA:   3'- aCGGGUcaugaGCAUGUGgUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 82429 0.67 0.988605
Target:  5'- uUGCCCAGagGCgaugUGUGCACCGAG-GUc -3'
miRNA:   3'- -ACGGGUCa-UGa---GCAUGUGGUUUgCGu -5'
16647 3' -52 NC_004156.1 + 76409 0.67 0.988605
Target:  5'- cGUCCAaguGUACUCGUACAguuUCAGAUuggGCAc -3'
miRNA:   3'- aCGGGU---CAUGAGCAUGU---GGUUUG---CGU- -5'
16647 3' -52 NC_004156.1 + 18874 0.67 0.988605
Target:  5'- aGCCUAGUACUaGUACuACCAAAaauCAa -3'
miRNA:   3'- aCGGGUCAUGAgCAUG-UGGUUUgc-GU- -5'
16647 3' -52 NC_004156.1 + 211567 0.67 0.987106
Target:  5'- gUGCUCuaucgucgucGUugUCGUACuguuCCAGAUGCAu -3'
miRNA:   3'- -ACGGGu---------CAugAGCAUGu---GGUUUGCGU- -5'
16647 3' -52 NC_004156.1 + 174520 0.67 0.987106
Target:  5'- uUGCCCucGUACUCGUcGCGuuggugguCCA-GCGCAu -3'
miRNA:   3'- -ACGGGu-CAUGAGCA-UGU--------GGUuUGCGU- -5'
16647 3' -52 NC_004156.1 + 175763 0.67 0.987106
Target:  5'- cGUCUagacGGUGCUCGUcCACCGAACu-- -3'
miRNA:   3'- aCGGG----UCAUGAGCAuGUGGUUUGcgu -5'
16647 3' -52 NC_004156.1 + 109843 0.67 0.985458
Target:  5'- aUGCaCUAG-ACUCGUugACCGAACc-- -3'
miRNA:   3'- -ACG-GGUCaUGAGCAugUGGUUUGcgu -5'
16647 3' -52 NC_004156.1 + 213895 0.68 0.983466
Target:  5'- cGCCagAGUACUggugcguacCGUGCACCGAGCcgagacgGCAa -3'
miRNA:   3'- aCGGg-UCAUGA---------GCAUGUGGUUUG-------CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.