miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16649 5' -48.6 NC_004156.1 + 218267 0.66 0.999874
Target:  5'- aGCCGGUCCauuucGCGCUGaucGUACUcGGACg -3'
miRNA:   3'- -UGGUUAGGgu---UGUGAU---CAUGAcCUUG- -5'
16649 5' -48.6 NC_004156.1 + 25964 0.66 0.999874
Target:  5'- cACCAGUCUCGGCuuuuuaUAGUGC-GGAu- -3'
miRNA:   3'- -UGGUUAGGGUUGug----AUCAUGaCCUug -5'
16649 5' -48.6 NC_004156.1 + 156209 0.66 0.999874
Target:  5'- uACCGGUCaucACACagAGUgccaACUGGAGCa -3'
miRNA:   3'- -UGGUUAGgguUGUGa-UCA----UGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 59084 0.66 0.999874
Target:  5'- gGCUg--CUggUAGCACUGGUACUGGuAGCu -3'
miRNA:   3'- -UGGuuaGG--GUUGUGAUCAUGACC-UUG- -5'
16649 5' -48.6 NC_004156.1 + 207649 0.66 0.999874
Target:  5'- uACCA---CCAGUACUAGUACUGGcuCu -3'
miRNA:   3'- -UGGUuagGGUUGUGAUCAUGACCuuG- -5'
16649 5' -48.6 NC_004156.1 + 88732 0.66 0.999874
Target:  5'- uACCGAUUCCAAUACUaacagugccaagAGUACU--AACa -3'
miRNA:   3'- -UGGUUAGGGUUGUGA------------UCAUGAccUUG- -5'
16649 5' -48.6 NC_004156.1 + 183608 0.66 0.999853
Target:  5'- uGCCAA-CCUaugguaccugggagcGACGCUGGccgcACUGGGACc -3'
miRNA:   3'- -UGGUUaGGG---------------UUGUGAUCa---UGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 46769 0.66 0.999837
Target:  5'- gGCUuGUCCgGGuuauugaauuCACUGGUAUUGGAAUu -3'
miRNA:   3'- -UGGuUAGGgUU----------GUGAUCAUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 135427 0.66 0.999837
Target:  5'- -gCAAUCCUAGC---AGcACUGGAACa -3'
miRNA:   3'- ugGUUAGGGUUGugaUCaUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 137261 0.66 0.999735
Target:  5'- uACCAAg-UCAAaa-UAGUACUGGGGCa -3'
miRNA:   3'- -UGGUUagGGUUgugAUCAUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 49668 0.66 0.999665
Target:  5'- uACCAAUCUUAccACACUu-UACUGGAc- -3'
miRNA:   3'- -UGGUUAGGGU--UGUGAucAUGACCUug -5'
16649 5' -48.6 NC_004156.1 + 111007 0.66 0.999665
Target:  5'- gAUUGAUUCCAGCAa-AGUGUUGGAACg -3'
miRNA:   3'- -UGGUUAGGGUUGUgaUCAUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 209167 0.66 0.999665
Target:  5'- cACCGAUaCCGACuCUGGUuCUGGuACu -3'
miRNA:   3'- -UGGUUAgGGUUGuGAUCAuGACCuUG- -5'
16649 5' -48.6 NC_004156.1 + 206050 0.67 0.999579
Target:  5'- cACCugcAUCggagaguaCCGGCACUGGUaccggugcugucACUGGAGCc -3'
miRNA:   3'- -UGGu--UAG--------GGUUGUGAUCA------------UGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 214140 0.67 0.999198
Target:  5'- gUCGAUUCgAcACACUGGacggcUACUGGAGCa -3'
miRNA:   3'- uGGUUAGGgU-UGUGAUC-----AUGACCUUG- -5'
16649 5' -48.6 NC_004156.1 + 177184 0.67 0.999018
Target:  5'- cACaCAAUgCCAucgaGCGuCUGGUGCUGGAc- -3'
miRNA:   3'- -UG-GUUAgGGU----UGU-GAUCAUGACCUug -5'
16649 5' -48.6 NC_004156.1 + 124834 0.67 0.999018
Target:  5'- uAUCAAUCaaAACACUGGUgaACUGGuuccGCa -3'
miRNA:   3'- -UGGUUAGggUUGUGAUCA--UGACCu---UG- -5'
16649 5' -48.6 NC_004156.1 + 5802 0.67 0.999018
Target:  5'- uUCAAUCCUAACACUAauacauuuGUACUGu-ACa -3'
miRNA:   3'- uGGUUAGGGUUGUGAU--------CAUGACcuUG- -5'
16649 5' -48.6 NC_004156.1 + 213887 0.68 0.998805
Target:  5'- ---cGUCUCGACGCcagAGUACUGGuGCg -3'
miRNA:   3'- ugguUAGGGUUGUGa--UCAUGACCuUG- -5'
16649 5' -48.6 NC_004156.1 + 96524 0.68 0.998805
Target:  5'- cCCGAUCCCAGC-CUAGaguaUACUGu-ACa -3'
miRNA:   3'- uGGUUAGGGUUGuGAUC----AUGACcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.