miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16666 3' -52.7 NC_004156.1 + 53340 1.14 0.004133
Target:  5'- aUCAAAACCAGCACCACCACCAGUGCCa -3'
miRNA:   3'- -AGUUUUGGUCGUGGUGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 185941 0.84 0.29334
Target:  5'- cUAGuACCAGUACCAgUGCCAGUGCCa -3'
miRNA:   3'- aGUUuUGGUCGUGGUgGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 206322 0.82 0.352007
Target:  5'- cCAGugaCAGCACCGgUACCAGUGCCg -3'
miRNA:   3'- aGUUuugGUCGUGGUgGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 181981 0.82 0.367915
Target:  5'- aUCGAgauggcAACCAGCACCACCGauuguaugauacCCAGUGCa -3'
miRNA:   3'- -AGUU------UUGGUCGUGGUGGU------------GGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 152940 0.8 0.445358
Target:  5'- aCAuuGCguGCACCACCAUCAuUGCCa -3'
miRNA:   3'- aGUuuUGguCGUGGUGGUGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 226109 0.8 0.463775
Target:  5'- cUAGAACCAccGaCACCACCuccugaACCAGUGCCa -3'
miRNA:   3'- aGUUUUGGU--C-GUGGUGG------UGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 39552 0.79 0.492123
Target:  5'- gCAGcGCCAGCAaCACUAgCAGUGCCa -3'
miRNA:   3'- aGUUuUGGUCGUgGUGGUgGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 206057 0.79 0.521245
Target:  5'- aUCGGAgaguACCGGCACUGgUACCGGUGCUg -3'
miRNA:   3'- -AGUUU----UGGUCGUGGUgGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 199676 0.79 0.521245
Target:  5'- aUCAAGACUAGCAaCACCAUUGGcUGCCa -3'
miRNA:   3'- -AGUUUUGGUCGUgGUGGUGGUC-ACGG- -5'
16666 3' -52.7 NC_004156.1 + 114991 0.78 0.561054
Target:  5'- cCAAugauGACUAGCACCACCgcaACCAcUGCCa -3'
miRNA:   3'- aGUU----UUGGUCGUGGUGG---UGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 145322 0.78 0.571145
Target:  5'- aCAucGCgAaaCACCACCACCGGUGCCu -3'
miRNA:   3'- aGUuuUGgUc-GUGGUGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 123044 0.77 0.622112
Target:  5'- cCAGuGCCAGUACCAgUACCAGUaCCa -3'
miRNA:   3'- aGUUuUGGUCGUGGUgGUGGUCAcGG- -5'
16666 3' -52.7 NC_004156.1 + 61198 0.76 0.642604
Target:  5'- aCGAAcCCGGCugCACCACCgacGGUGUg -3'
miRNA:   3'- aGUUUuGGUCGugGUGGUGG---UCACGg -5'
16666 3' -52.7 NC_004156.1 + 16632 0.76 0.652842
Target:  5'- cCAGAucCCA-CACCACCACCGauucGUGCCg -3'
miRNA:   3'- aGUUUu-GGUcGUGGUGGUGGU----CACGG- -5'
16666 3' -52.7 NC_004156.1 + 45915 0.76 0.673259
Target:  5'- cUCuuGGCCAGUGCCaauACCaguACCAGUGCUg -3'
miRNA:   3'- -AGuuUUGGUCGUGG---UGG---UGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 58762 0.75 0.693541
Target:  5'- cUAGAGCCAGUACCggagccagaGCUACCAGUaCCa -3'
miRNA:   3'- aGUUUUGGUCGUGG---------UGGUGGUCAcGG- -5'
16666 3' -52.7 NC_004156.1 + 171465 0.74 0.752862
Target:  5'- cUCuuGAACgCAGUGCCACUgcuACCAGUGCUc -3'
miRNA:   3'- -AGu-UUUG-GUCGUGGUGG---UGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 77976 0.74 0.752862
Target:  5'- cCAAAACUugaACgCACCACCAGUGCa -3'
miRNA:   3'- aGUUUUGGucgUG-GUGGUGGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 68364 0.74 0.771881
Target:  5'- aCGAGuCCAGCGugGCCACCGuuGUGCCc -3'
miRNA:   3'- aGUUUuGGUCGUggUGGUGGU--CACGG- -5'
16666 3' -52.7 NC_004156.1 + 114770 0.74 0.771881
Target:  5'- aUCGAAGCCGGUGCaCGgCACCuuUGCCu -3'
miRNA:   3'- -AGUUUUGGUCGUG-GUgGUGGucACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.