miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16666 3' -52.7 NC_004156.1 + 25898 0.71 0.906798
Target:  5'- cUAGuACCAGaCGCUGCCuacACCAGUGCg -3'
miRNA:   3'- aGUUuUGGUC-GUGGUGG---UGGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 76754 0.73 0.833219
Target:  5'- gUCcuuGCCGGCAaugauggcuccguCCACCACUAG-GCCa -3'
miRNA:   3'- -AGuuuUGGUCGU-------------GGUGGUGGUCaCGG- -5'
16666 3' -52.7 NC_004156.1 + 103747 0.72 0.842259
Target:  5'- aUCAAAugCAcccGCACCAUaccaaaagagUGCCAGUGCUa -3'
miRNA:   3'- -AGUUUugGU---CGUGGUG----------GUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 95207 0.72 0.842259
Target:  5'- cCGAuuCUAGUACUcuggaaGCUACCAGUGCUg -3'
miRNA:   3'- aGUUuuGGUCGUGG------UGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 16199 0.72 0.850276
Target:  5'- aCGAGACCGGUGCCAgauCCAuugguuacUCGGUGCUg -3'
miRNA:   3'- aGUUUUGGUCGUGGU---GGU--------GGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 143610 0.72 0.858096
Target:  5'- --cAAGCCGGCACCAgCAgCAuGUGCa -3'
miRNA:   3'- aguUUUGGUCGUGGUgGUgGU-CACGg -5'
16666 3' -52.7 NC_004156.1 + 19031 0.72 0.873114
Target:  5'- cUCAAcgaacuGACCAGCGCagauuuuGCCGCCAGcguUGCUg -3'
miRNA:   3'- -AGUU------UUGGUCGUGg------UGGUGGUC---ACGG- -5'
16666 3' -52.7 NC_004156.1 + 20611 0.71 0.886582
Target:  5'- gUAGAACCGGCAacaaCACCaacaacaACCGGUGgCa -3'
miRNA:   3'- aGUUUUGGUCGUg---GUGG-------UGGUCACgG- -5'
16666 3' -52.7 NC_004156.1 + 135239 0.71 0.887268
Target:  5'- cUAcuACUAGCACUACUACCAGUaGUa -3'
miRNA:   3'- aGUuuUGGUCGUGGUGGUGGUCA-CGg -5'
16666 3' -52.7 NC_004156.1 + 214079 0.73 0.825656
Target:  5'- uUCAAuguacccuuuCCGGcCACCACUguGCCGGUGCUg -3'
miRNA:   3'- -AGUUuu--------GGUC-GUGGUGG--UGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 158510 0.74 0.790401
Target:  5'- -gGAGACUcgGGUGCCACCGCCGGaGCUu -3'
miRNA:   3'- agUUUUGG--UCGUGGUGGUGGUCaCGG- -5'
16666 3' -52.7 NC_004156.1 + 58810 0.74 0.781208
Target:  5'- cCAGAgcuACCAGUACCagaGCUACCAGUaCCa -3'
miRNA:   3'- aGUUU---UGGUCGUGG---UGGUGGUCAcGG- -5'
16666 3' -52.7 NC_004156.1 + 185941 0.84 0.29334
Target:  5'- cUAGuACCAGUACCAgUGCCAGUGCCa -3'
miRNA:   3'- aGUUuUGGUCGUGGUgGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 181981 0.82 0.367915
Target:  5'- aUCGAgauggcAACCAGCACCACCGauuguaugauacCCAGUGCa -3'
miRNA:   3'- -AGUU------UUGGUCGUGGUGGU------------GGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 152940 0.8 0.445358
Target:  5'- aCAuuGCguGCACCACCAUCAuUGCCa -3'
miRNA:   3'- aGUuuUGguCGUGGUGGUGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 226109 0.8 0.463775
Target:  5'- cUAGAACCAccGaCACCACCuccugaACCAGUGCCa -3'
miRNA:   3'- aGUUUUGGU--C-GUGGUGG------UGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 206057 0.79 0.521245
Target:  5'- aUCGGAgaguACCGGCACUGgUACCGGUGCUg -3'
miRNA:   3'- -AGUUU----UGGUCGUGGUgGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 145322 0.78 0.571145
Target:  5'- aCAucGCgAaaCACCACCACCGGUGCCu -3'
miRNA:   3'- aGUuuUGgUc-GUGGUGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 61198 0.76 0.642604
Target:  5'- aCGAAcCCGGCugCACCACCgacGGUGUg -3'
miRNA:   3'- aGUUUuGGUCGugGUGGUGG---UCACGg -5'
16666 3' -52.7 NC_004156.1 + 58762 0.75 0.693541
Target:  5'- cUAGAGCCAGUACCggagccagaGCUACCAGUaCCa -3'
miRNA:   3'- aGUUUUGGUCGUGG---------UGGUGGUCAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.