miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16666 3' -52.7 NC_004156.1 + 3230 0.67 0.980116
Target:  5'- gUUAGAACuCuGC-CCauuGCCACCaaGGUGCCg -3'
miRNA:   3'- -AGUUUUG-GuCGuGG---UGGUGG--UCACGG- -5'
16666 3' -52.7 NC_004156.1 + 4775 0.7 0.91284
Target:  5'- aUCGccACCAGUgguAUCACCACCAGUcaaCCa -3'
miRNA:   3'- -AGUuuUGGUCG---UGGUGGUGGUCAc--GG- -5'
16666 3' -52.7 NC_004156.1 + 11200 0.66 0.99025
Target:  5'- aUCAAAAUCAaUACCAaUACCAaUGCCa -3'
miRNA:   3'- -AGUUUUGGUcGUGGUgGUGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 16199 0.72 0.850276
Target:  5'- aCGAGACCGGUGCCAgauCCAuugguuacUCGGUGCUg -3'
miRNA:   3'- aGUUUUGGUCGUGGU---GGU--------GGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 16207 0.69 0.944082
Target:  5'- uUCAAacGACUGGgACCGCCuCCGGUgggcGCCu -3'
miRNA:   3'- -AGUU--UUGGUCgUGGUGGuGGUCA----CGG- -5'
16666 3' -52.7 NC_004156.1 + 16632 0.76 0.652842
Target:  5'- cCAGAucCCA-CACCACCACCGauucGUGCCg -3'
miRNA:   3'- aGUUUu-GGUcGUGGUGGUGGU----CACGG- -5'
16666 3' -52.7 NC_004156.1 + 17682 0.71 0.906798
Target:  5'- aCGAGuACUAGUAaCACUACUAGUGCUa -3'
miRNA:   3'- aGUUU-UGGUCGUgGUGGUGGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 18030 0.69 0.952598
Target:  5'- gUCAAcgUCAGaGCgGCCACCGaUGCCg -3'
miRNA:   3'- -AGUUuuGGUCgUGgUGGUGGUcACGG- -5'
16666 3' -52.7 NC_004156.1 + 19031 0.72 0.873114
Target:  5'- cUCAAcgaacuGACCAGCGCagauuuuGCCGCCAGcguUGCUg -3'
miRNA:   3'- -AGUU------UUGGUCGUGg------UGGUGGUC---ACGG- -5'
16666 3' -52.7 NC_004156.1 + 20611 0.71 0.886582
Target:  5'- gUAGAACCGGCAacaaCACCaacaacaACCGGUGgCa -3'
miRNA:   3'- aGUUUUGGUCGUg---GUGG-------UGGUCACgG- -5'
16666 3' -52.7 NC_004156.1 + 23374 0.66 0.993488
Target:  5'- aCAGAGCCuaacgaucGCAUCGCaCGCCuagguGUGCa -3'
miRNA:   3'- aGUUUUGGu-------CGUGGUG-GUGGu----CACGg -5'
16666 3' -52.7 NC_004156.1 + 25898 0.71 0.906798
Target:  5'- cUAGuACCAGaCGCUGCCuacACCAGUGCg -3'
miRNA:   3'- aGUUuUGGUC-GUGGUGG---UGGUCACGg -5'
16666 3' -52.7 NC_004156.1 + 39428 0.68 0.969945
Target:  5'- cCAAAGaaGGCACCGCCuCUguUGCCg -3'
miRNA:   3'- aGUUUUggUCGUGGUGGuGGucACGG- -5'
16666 3' -52.7 NC_004156.1 + 39552 0.79 0.492123
Target:  5'- gCAGcGCCAGCAaCACUAgCAGUGCCa -3'
miRNA:   3'- aGUUuUGGUCGUgGUGGUgGUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 39813 0.66 0.991331
Target:  5'- ----cGCCGGUuaagaguacACCACCACCuacuaagAGUGCa -3'
miRNA:   3'- aguuuUGGUCG---------UGGUGGUGG-------UCACGg -5'
16666 3' -52.7 NC_004156.1 + 39930 0.7 0.918645
Target:  5'- cCAGuACCAGCAaCACUACUAGUGgUa -3'
miRNA:   3'- aGUUuUGGUCGUgGUGGUGGUCACgG- -5'
16666 3' -52.7 NC_004156.1 + 40227 0.67 0.977856
Target:  5'- cCAAAACCAGaGCCAUgAagAGUGUCa -3'
miRNA:   3'- aGUUUUGGUCgUGGUGgUggUCACGG- -5'
16666 3' -52.7 NC_004156.1 + 40791 0.74 0.781208
Target:  5'- cCAGAGCCAGaGCCAgaGCCAGcGCCc -3'
miRNA:   3'- aGUUUUGGUCgUGGUggUGGUCaCGG- -5'
16666 3' -52.7 NC_004156.1 + 41120 0.66 0.993488
Target:  5'- cCGAAACCuccacuuGCACCACCGuuuccucccCCAuUGCg -3'
miRNA:   3'- aGUUUUGGu------CGUGGUGGU---------GGUcACGg -5'
16666 3' -52.7 NC_004156.1 + 42477 0.7 0.939472
Target:  5'- uUCAAG---AGCAUCGCCACaUGGUGCCc -3'
miRNA:   3'- -AGUUUuggUCGUGGUGGUG-GUCACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.