miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 5' -53.1 NC_004156.1 + 58786 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58816 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58753 0.83 0.261244
Target:  5'- cUACCAGUACUAGAGCcagUACCGGaGCCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCG---AUGGUCaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 123041 0.83 0.294254
Target:  5'- gUGCCAGUACCAG---UACCAGUACCAa -3'
miRNA:   3'- -AUGGUCAUGGUCucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 185944 0.83 0.294254
Target:  5'- gUACCAGUACCAG---UGCCAGUGCCAg -3'
miRNA:   3'- -AUGGUCAUGGUCucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 209420 0.8 0.378014
Target:  5'- gUACCAGaACCAGAGUcggUAUCGGUGCCAu -3'
miRNA:   3'- -AUGGUCaUGGUCUCG---AUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 45910 0.79 0.457513
Target:  5'- gGCCAGUGCCAa---UACCAGUACCAg -3'
miRNA:   3'- aUGGUCAUGGUcucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 171459 0.77 0.56539
Target:  5'- aACgCAGUGCCAcuGCUACCAGUGCUc -3'
miRNA:   3'- aUG-GUCAUGGUcuCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 40793 0.75 0.668428
Target:  5'- gGCCAGaGCCAGAGCcagaGCCAGcGCCc -3'
miRNA:   3'- aUGGUCaUGGUCUCGa---UGGUCaUGGu -5'
16669 5' -53.1 NC_004156.1 + 158535 0.74 0.699131
Target:  5'- uUACUAcUACUAGuGCUACCAGUACUg -3'
miRNA:   3'- -AUGGUcAUGGUCuCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 25895 0.74 0.719328
Target:  5'- cACCuAGUACCAGAcGCUGCCuacACCAg -3'
miRNA:   3'- aUGG-UCAUGGUCU-CGAUGGucaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 16203 0.74 0.728322
Target:  5'- gACCGGUGCCAGAuccauugGUUACuCGGUGCUg -3'
miRNA:   3'- aUGGUCAUGGUCU-------CGAUG-GUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 164659 0.73 0.75873
Target:  5'- gUACUGGUACUGGAGagggUACCAGUGCUg -3'
miRNA:   3'- -AUGGUCAUGGUCUCg---AUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 95212 0.73 0.777782
Target:  5'- -uCUAGUACUcuGGaAGCUACCAGUGCUg -3'
miRNA:   3'- auGGUCAUGG--UC-UCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 206312 0.72 0.822923
Target:  5'- cACCGGUACCAG---UGCCGGUACUc -3'
miRNA:   3'- aUGGUCAUGGUCucgAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 226002 0.71 0.847952
Target:  5'- cAUCAGaACUAGAGCUuacACCAGUAUUAa -3'
miRNA:   3'- aUGGUCaUGGUCUCGA---UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 164395 0.71 0.86365
Target:  5'- -uCCAGUGCCAGcacuGGUacccucuCCAGUACCAg -3'
miRNA:   3'- auGGUCAUGGUC----UCGau-----GGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 227039 0.69 0.917522
Target:  5'- cACUAGUAUCAGAGUUGgCAcuuGUACUAg -3'
miRNA:   3'- aUGGUCAUGGUCUCGAUgGU---CAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 90272 0.69 0.928609
Target:  5'- gUGCCAGUGCCGuuGaCUAguaaCAGUGCCGa -3'
miRNA:   3'- -AUGGUCAUGGUcuC-GAUg---GUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 89580 0.68 0.94341
Target:  5'- -uCCGaUGCCAGAGCa--CGGUACCAu -3'
miRNA:   3'- auGGUcAUGGUCUCGaugGUCAUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.