miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 5' -53.1 NC_004156.1 + 11190 0.68 0.956051
Target:  5'- aUACCAaUACCAa---UGCCAGUACCAa -3'
miRNA:   3'- -AUGGUcAUGGUcucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 16203 0.74 0.728322
Target:  5'- gACCGGUGCCAGAuccauugGUUACuCGGUGCUg -3'
miRNA:   3'- aUGGUCAUGGUCU-------CGAUG-GUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 17678 0.67 0.963319
Target:  5'- gUACUAGUaacacuACUAGuGCUacaACUAGUACCAc -3'
miRNA:   3'- -AUGGUCA------UGGUCuCGA---UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 23968 0.66 0.9798
Target:  5'- cUACCAGaguauuUACCAGAGUauagcuuUAUCagAGUACCAg -3'
miRNA:   3'- -AUGGUC------AUGGUCUCG-------AUGG--UCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 25895 0.74 0.719328
Target:  5'- cACCuAGUACCAGAcGCUGCCuacACCAg -3'
miRNA:   3'- aUGG-UCAUGGUCU-CGAUGGucaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 40793 0.75 0.668428
Target:  5'- gGCCAGaGCCAGAGCcagaGCCAGcGCCc -3'
miRNA:   3'- aUGGUCaUGGUCUCGa---UGGUCaUGGu -5'
16669 5' -53.1 NC_004156.1 + 45910 0.79 0.457513
Target:  5'- gGCCAGUGCCAa---UACCAGUACCAg -3'
miRNA:   3'- aUGGUCAUGGUcucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 49813 0.68 0.952073
Target:  5'- gUAUCAGUGCUAGuaccAGC-AUCAGUACUAg -3'
miRNA:   3'- -AUGGUCAUGGUC----UCGaUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 52425 0.67 0.962977
Target:  5'- -cCCAGUACgGgcaguaguuuuacGAGC-ACCGGUACCGu -3'
miRNA:   3'- auGGUCAUGgU-------------CUCGaUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58753 0.83 0.261244
Target:  5'- cUACCAGUACUAGAGCcagUACCGGaGCCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCG---AUGGUCaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58786 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58816 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 60337 0.67 0.977731
Target:  5'- gUGCgGGUGCCuGuAGUugUACCAGUguGCCAg -3'
miRNA:   3'- -AUGgUCAUGGuC-UCG--AUGGUCA--UGGU- -5'
16669 5' -53.1 NC_004156.1 + 66742 0.67 0.97258
Target:  5'- aACCGGUAUaguGGCUcaACCAGUACUg -3'
miRNA:   3'- aUGGUCAUGgucUCGA--UGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 68491 0.67 0.969704
Target:  5'- gACUAGUGCCAGcAG-UACCAGcACUg -3'
miRNA:   3'- aUGGUCAUGGUC-UCgAUGGUCaUGGu -5'
16669 5' -53.1 NC_004156.1 + 85898 0.66 0.987461
Target:  5'- cGCagGGUGCUc--GCUACCAGUACCc -3'
miRNA:   3'- aUGg-UCAUGGucuCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 89147 0.66 0.984797
Target:  5'- gUGCCGGUACgaaacgcaaagcaaaCAGAGCcACCaaagaGGUGCCc -3'
miRNA:   3'- -AUGGUCAUG---------------GUCUCGaUGG-----UCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 89580 0.68 0.94341
Target:  5'- -uCCGaUGCCAGAGCa--CGGUACCAu -3'
miRNA:   3'- auGGUcAUGGUCUCGaugGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 90272 0.69 0.928609
Target:  5'- gUGCCAGUGCCGuuGaCUAguaaCAGUGCCGa -3'
miRNA:   3'- -AUGGUCAUGGUcuC-GAUg---GUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 91293 0.66 0.98213
Target:  5'- aUGCCAGUGUCaAGAGUggUACUAGUGCa- -3'
miRNA:   3'- -AUGGUCAUGG-UCUCG--AUGGUCAUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.