miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16669 5' -53.1 NC_004156.1 + 58786 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 206072 0.68 0.956051
Target:  5'- cACUGGUACCGGuGCUgucACUGGaGCCAa -3'
miRNA:   3'- aUGGUCAUGGUCuCGA---UGGUCaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 113658 0.67 0.969704
Target:  5'- aGCCAGUagACgAGAuaccgGCCAGUACCGu -3'
miRNA:   3'- aUGGUCA--UGgUCUcga--UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 66742 0.67 0.97258
Target:  5'- aACCGGUAUaguGGCUcaACCAGUACUg -3'
miRNA:   3'- aUGGUCAUGgucUCGA--UGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 109169 0.67 0.977492
Target:  5'- aUGCCGGUGCCgagaguAGAGCc-CCAGUcucggcaucgaugACCAc -3'
miRNA:   3'- -AUGGUCAUGG------UCUCGauGGUCA-------------UGGU- -5'
16669 5' -53.1 NC_004156.1 + 60337 0.67 0.977731
Target:  5'- gUGCgGGUGCCuGuAGUugUACCAGUguGCCAg -3'
miRNA:   3'- -AUGgUCAUGGuC-UCG--AUGGUCA--UGGU- -5'
16669 5' -53.1 NC_004156.1 + 23968 0.66 0.9798
Target:  5'- cUACCAGaguauuUACCAGAGUauagcuuUAUCagAGUACCAg -3'
miRNA:   3'- -AUGGUC------AUGGUCUCG-------AUGG--UCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 103761 0.66 0.987461
Target:  5'- cACCA-UACCaaaAGAG-UGCCAGUGCUAa -3'
miRNA:   3'- aUGGUcAUGG---UCUCgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 85898 0.66 0.987461
Target:  5'- cGCagGGUGCUc--GCUACCAGUACCc -3'
miRNA:   3'- aUGg-UCAUGGucuCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 112566 0.68 0.955664
Target:  5'- cACCAGUACC-GAGUUugUGGUggacguguacaauGCCAa -3'
miRNA:   3'- aUGGUCAUGGuCUCGAugGUCA-------------UGGU- -5'
16669 5' -53.1 NC_004156.1 + 217287 0.68 0.947861
Target:  5'- cUACCAGUACuugaaugcaCAGAGCUACaacauuUGCCAa -3'
miRNA:   3'- -AUGGUCAUG---------GUCUCGAUGguc---AUGGU- -5'
16669 5' -53.1 NC_004156.1 + 227039 0.69 0.917522
Target:  5'- cACUAGUAUCAGAGUUGgCAcuuGUACUAg -3'
miRNA:   3'- aUGGUCAUGGUCUCGAUgGU---CAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58816 1.07 0.008718
Target:  5'- cUACCAGUACCAGAGCUACCAGUACCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCGAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 58753 0.83 0.261244
Target:  5'- cUACCAGUACUAGAGCcagUACCGGaGCCAg -3'
miRNA:   3'- -AUGGUCAUGGUCUCG---AUGGUCaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 185944 0.83 0.294254
Target:  5'- gUACCAGUACCAG---UGCCAGUGCCAg -3'
miRNA:   3'- -AUGGUCAUGGUCucgAUGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 25895 0.74 0.719328
Target:  5'- cACCuAGUACCAGAcGCUGCCuacACCAg -3'
miRNA:   3'- aUGG-UCAUGGUCU-CGAUGGucaUGGU- -5'
16669 5' -53.1 NC_004156.1 + 16203 0.74 0.728322
Target:  5'- gACCGGUGCCAGAuccauugGUUACuCGGUGCUg -3'
miRNA:   3'- aUGGUCAUGGUCU-------CGAUG-GUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 95212 0.73 0.777782
Target:  5'- -uCUAGUACUcuGGaAGCUACCAGUGCUg -3'
miRNA:   3'- auGGUCAUGG--UC-UCGAUGGUCAUGGu -5'
16669 5' -53.1 NC_004156.1 + 226002 0.71 0.847952
Target:  5'- cAUCAGaACUAGAGCUuacACCAGUAUUAa -3'
miRNA:   3'- aUGGUCaUGGUCUCGA---UGGUCAUGGU- -5'
16669 5' -53.1 NC_004156.1 + 164395 0.71 0.86365
Target:  5'- -uCCAGUGCCAGcacuGGUacccucuCCAGUACCAg -3'
miRNA:   3'- auGGUCAUGGUC----UCGau-----GGUCAUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.