miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16678 5' -53.1 NC_004156.1 + 54823 0.66 0.992549
Target:  5'- ---aUCGGCAUCGGUaucGGCCucuaCAUCUg -3'
miRNA:   3'- ucagAGCCGUAGCUA---CUGGug--GUAGG- -5'
16678 5' -53.1 NC_004156.1 + 102640 0.66 0.992549
Target:  5'- --cUUCGGCGUCaauguGAaucUGACCACCucugCCg -3'
miRNA:   3'- ucaGAGCCGUAG-----CU---ACUGGUGGua--GG- -5'
16678 5' -53.1 NC_004156.1 + 104429 0.66 0.992549
Target:  5'- gAGUCU--GCAUCGGUggGAUCACUcuuGUCCa -3'
miRNA:   3'- -UCAGAgcCGUAGCUA--CUGGUGG---UAGG- -5'
16678 5' -53.1 NC_004156.1 + 146610 0.66 0.991928
Target:  5'- --aCUUGGCAUCGGagagaagccuaacgaUG-CCACUAUUCg -3'
miRNA:   3'- ucaGAGCCGUAGCU---------------ACuGGUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 1357 0.66 0.991928
Target:  5'- cGUCaUCGGUuUCGAU-ACCgcuacguuuaggaguGCCGUCCg -3'
miRNA:   3'- uCAG-AGCCGuAGCUAcUGG---------------UGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 111811 0.66 0.991037
Target:  5'- uGUCUgCGGCAaacucaUCGuccagcuugcguuUGACCGCC-UCCu -3'
miRNA:   3'- uCAGA-GCCGU------AGCu------------ACUGGUGGuAGG- -5'
16678 5' -53.1 NC_004156.1 + 147543 0.66 0.990319
Target:  5'- aGGUC-CGGCGaCGAagaGAUUACCGUCa -3'
miRNA:   3'- -UCAGaGCCGUaGCUa--CUGGUGGUAGg -5'
16678 5' -53.1 NC_004156.1 + 135824 0.66 0.990319
Target:  5'- uAGcCgUgGGCAUCGGUG-CCACCAg-- -3'
miRNA:   3'- -UCaG-AgCCGUAGCUACuGGUGGUagg -5'
16678 5' -53.1 NC_004156.1 + 140156 0.66 0.990319
Target:  5'- cGUaCUCGGCAccgUGAUGAacaCACCGgacaauacgacUCCg -3'
miRNA:   3'- uCA-GAGCCGUa--GCUACUg--GUGGU-----------AGG- -5'
16678 5' -53.1 NC_004156.1 + 39772 0.66 0.989024
Target:  5'- uGUCUgGGCGauuUC-AUGGCCGuuAUCCu -3'
miRNA:   3'- uCAGAgCCGU---AGcUACUGGUggUAGG- -5'
16678 5' -53.1 NC_004156.1 + 79556 0.67 0.987597
Target:  5'- --aCUCGGUAcCGAUGGCCagauGCCgAUUCa -3'
miRNA:   3'- ucaGAGCCGUaGCUACUGG----UGG-UAGG- -5'
16678 5' -53.1 NC_004156.1 + 95669 0.67 0.987447
Target:  5'- -aUCUgGGCAcguacacUCGGUGuCCACCGaaugcguuUCCg -3'
miRNA:   3'- ucAGAgCCGU-------AGCUACuGGUGGU--------AGG- -5'
16678 5' -53.1 NC_004156.1 + 89415 0.67 0.982451
Target:  5'- uGGUgaCUCGGCA-CGAucucuuguUGACCAUCGUggCCa -3'
miRNA:   3'- -UCA--GAGCCGUaGCU--------ACUGGUGGUA--GG- -5'
16678 5' -53.1 NC_004156.1 + 149261 0.67 0.982451
Target:  5'- cAGUCacCGGCAUCGAcgucgcaaagUGACCaaACUAcCCa -3'
miRNA:   3'- -UCAGa-GCCGUAGCU----------ACUGG--UGGUaGG- -5'
16678 5' -53.1 NC_004156.1 + 15560 0.67 0.980421
Target:  5'- cGUCUCGGgAUCGgcGAC-GCCAcUCUu -3'
miRNA:   3'- uCAGAGCCgUAGCuaCUGgUGGU-AGG- -5'
16678 5' -53.1 NC_004156.1 + 129540 0.67 0.97822
Target:  5'- --aCUCuGCcgUGAUGACCACCAa-- -3'
miRNA:   3'- ucaGAGcCGuaGCUACUGGUGGUagg -5'
16678 5' -53.1 NC_004156.1 + 91777 0.67 0.97822
Target:  5'- cGGaCUCGGaGUCGGUGGCguCCAggaugCCa -3'
miRNA:   3'- -UCaGAGCCgUAGCUACUGguGGUa----GG- -5'
16678 5' -53.1 NC_004156.1 + 64572 0.68 0.975842
Target:  5'- uGGUCUCuucgGGC-UCGAgcuuuaCACCGUCCa -3'
miRNA:   3'- -UCAGAG----CCGuAGCUacug--GUGGUAGG- -5'
16678 5' -53.1 NC_004156.1 + 95717 0.68 0.973279
Target:  5'- uAGUUUgGGCcgaAUCGGUGACCGuCUcgaAUCCc -3'
miRNA:   3'- -UCAGAgCCG---UAGCUACUGGU-GG---UAGG- -5'
16678 5' -53.1 NC_004156.1 + 25967 0.68 0.973279
Target:  5'- cAGUCUCGGCuUUuuauagugcgGAUGGCCcCCAcUCUg -3'
miRNA:   3'- -UCAGAGCCGuAG----------CUACUGGuGGU-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.