Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16692 | 5' | -49 | NC_004156.1 | + | 2223 | 0.72 | 0.967582 |
Target: 5'- cAUUGGACAUGGAUGUauuagaugAUGCAUUCGa -3' miRNA: 3'- aUAGUUUGUGCCUACG--------UACGUGAGCc -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 19736 | 0.68 | 0.99678 |
Target: 5'- aAUCGGuACACGG--GCAUcGCugUCGGu -3' miRNA: 3'- aUAGUU-UGUGCCuaCGUA-CGugAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 22679 | 0.71 | 0.982942 |
Target: 5'- --gCAGACACGGAgcGCAggGUaACUCGGa -3' miRNA: 3'- auaGUUUGUGCCUa-CGUa-CG-UGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 32060 | 0.66 | 0.999614 |
Target: 5'- gAUCAAAgGcCGGG-GCuagGUACUCGGu -3' miRNA: 3'- aUAGUUUgU-GCCUaCGua-CGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 52601 | 0.75 | 0.90597 |
Target: 5'- gUAUCGAGCACGGua--AUGUACUUGGu -3' miRNA: 3'- -AUAGUUUGUGCCuacgUACGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 71021 | 0.66 | 0.999519 |
Target: 5'- -uUCAAcUugGGcgaAUGCAUGCACaUUGGc -3' miRNA: 3'- auAGUUuGugCC---UACGUACGUG-AGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 83011 | 0.67 | 0.999098 |
Target: 5'- aGUCAAACAUGc-UGCAauccaccuuuUGCACUCGu -3' miRNA: 3'- aUAGUUUGUGCcuACGU----------ACGUGAGCc -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 85318 | 0.77 | 0.829823 |
Target: 5'- cGUCuuuGACugGGGUGCGuuaaagaUGCACUUGGc -3' miRNA: 3'- aUAGu--UUGugCCUACGU-------ACGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 87115 | 0.66 | 0.999686 |
Target: 5'- cUAUCAAcgccuACugGuauguuuGAUGCAacGCACUCGGu -3' miRNA: 3'- -AUAGUU-----UGugC-------CUACGUa-CGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 95828 | 0.66 | 0.999757 |
Target: 5'- cGUCAaccuGACugGGGUGCcuAUGCAagUGGa -3' miRNA: 3'- aUAGU----UUGugCCUACG--UACGUgaGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 96434 | 0.72 | 0.967582 |
Target: 5'- gAUUGGACACacuGGGUGCAcugggUGCACUgGGg -3' miRNA: 3'- aUAGUUUGUG---CCUACGU-----ACGUGAgCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 130916 | 0.66 | 0.999614 |
Target: 5'- aAUCAAACugGGccaUGUGCACUUGa -3' miRNA: 3'- aUAGUUUGugCCuacGUACGUGAGCc -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 137097 | 0.66 | 0.999805 |
Target: 5'- --cCGAGCGCGGuccucauguacauGUGC-UGUACUCGu -3' miRNA: 3'- auaGUUUGUGCC-------------UACGuACGUGAGCc -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 138370 | 0.81 | 0.622425 |
Target: 5'- cAUCAAACGCGGcGUGCAcaUGCuCUCGGu -3' miRNA: 3'- aUAGUUUGUGCC-UACGU--ACGuGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 151312 | 0.7 | 0.989586 |
Target: 5'- gUGUCcAGC-CGGAggGCAUcguugcGCACUCGGa -3' miRNA: 3'- -AUAGuUUGuGCCUa-CGUA------CGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 166086 | 0.73 | 0.952621 |
Target: 5'- gAUCGA-CACGGAcaacgGCguccgucugaguuGUGCACUCGGa -3' miRNA: 3'- aUAGUUuGUGCCUa----CG-------------UACGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 169850 | 0.68 | 0.997703 |
Target: 5'- --aCGAGCugGGAUGCGaguUGCGCg--- -3' miRNA: 3'- auaGUUUGugCCUACGU---ACGUGagcc -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 172650 | 1 | 0.067684 |
Target: 5'- uUAUC-AACACGGAUGCAUGCACUCGGu -3' miRNA: 3'- -AUAGuUUGUGCCUACGUACGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 180399 | 0.72 | 0.964291 |
Target: 5'- aAUCGGuuuGCG-GGAUGCGgcaGCACUCGGu -3' miRNA: 3'- aUAGUU---UGUgCCUACGUa--CGUGAGCC- -5' |
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16692 | 5' | -49 | NC_004156.1 | + | 183996 | 0.67 | 0.999217 |
Target: 5'- --gCGAAUAUGGccaaaucggcuccgGUGaGUGCACUCGGa -3' miRNA: 3'- auaGUUUGUGCC--------------UACgUACGUGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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