miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16692 5' -49 NC_004156.1 + 172650 1 0.067684
Target:  5'- uUAUC-AACACGGAUGCAUGCACUCGGu -3'
miRNA:   3'- -AUAGuUUGUGCCUACGUACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 137097 0.66 0.999805
Target:  5'- --cCGAGCGCGGuccucauguacauGUGC-UGUACUCGu -3'
miRNA:   3'- auaGUUUGUGCC-------------UACGuACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 95828 0.66 0.999757
Target:  5'- cGUCAaccuGACugGGGUGCcuAUGCAagUGGa -3'
miRNA:   3'- aUAGU----UUGugCCUACG--UACGUgaGCC- -5'
16692 5' -49 NC_004156.1 + 130916 0.66 0.999614
Target:  5'- aAUCAAACugGGccaUGUGCACUUGa -3'
miRNA:   3'- aUAGUUUGugCCuacGUACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 71021 0.66 0.999519
Target:  5'- -uUCAAcUugGGcgaAUGCAUGCACaUUGGc -3'
miRNA:   3'- auAGUUuGugCC---UACGUACGUG-AGCC- -5'
16692 5' -49 NC_004156.1 + 183996 0.67 0.999217
Target:  5'- --gCGAAUAUGGccaaaucggcuccgGUGaGUGCACUCGGa -3'
miRNA:   3'- auaGUUUGUGCC--------------UACgUACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 83011 0.67 0.999098
Target:  5'- aGUCAAACAUGc-UGCAauccaccuuuUGCACUCGu -3'
miRNA:   3'- aUAGUUUGUGCcuACGU----------ACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 218488 0.67 0.998668
Target:  5'- cAUCAA--GCGGAuuaaagUGCAU-CACUCGGu -3'
miRNA:   3'- aUAGUUugUGCCU------ACGUAcGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 169850 0.68 0.997703
Target:  5'- --aCGAGCugGGAUGCGaguUGCGCg--- -3'
miRNA:   3'- auaGUUUGugCCUACGU---ACGUGagcc -5'
16692 5' -49 NC_004156.1 + 19736 0.68 0.99678
Target:  5'- aAUCGGuACACGG--GCAUcGCugUCGGu -3'
miRNA:   3'- aUAGUU-UGUGCCuaCGUA-CGugAGCC- -5'
16692 5' -49 NC_004156.1 + 226223 0.69 0.994012
Target:  5'- ---uGAACaaACGGAUGCAaaaUGgACUCGGc -3'
miRNA:   3'- auagUUUG--UGCCUACGU---ACgUGAGCC- -5'
16692 5' -49 NC_004156.1 + 22679 0.71 0.982942
Target:  5'- --gCAGACACGGAgcGCAggGUaACUCGGa -3'
miRNA:   3'- auaGUUUGUGCCUa-CGUa-CG-UGAGCC- -5'
16692 5' -49 NC_004156.1 + 180399 0.72 0.964291
Target:  5'- aAUCGGuuuGCG-GGAUGCGgcaGCACUCGGu -3'
miRNA:   3'- aUAGUU---UGUgCCUACGUa--CGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 52601 0.75 0.90597
Target:  5'- gUAUCGAGCACGGua--AUGUACUUGGu -3'
miRNA:   3'- -AUAGUUUGUGCCuacgUACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 2223 0.72 0.967582
Target:  5'- cAUUGGACAUGGAUGUauuagaugAUGCAUUCGa -3'
miRNA:   3'- aUAGUUUGUGCCUACG--------UACGUGAGCc -5'
16692 5' -49 NC_004156.1 + 96434 0.72 0.967582
Target:  5'- gAUUGGACACacuGGGUGCAcugggUGCACUgGGg -3'
miRNA:   3'- aUAGUUUGUG---CCUACGU-----ACGUGAgCC- -5'
16692 5' -49 NC_004156.1 + 203365 0.73 0.953033
Target:  5'- aAUCuugcAGCACGGAUGCcgaaccUGUACUUGGu -3'
miRNA:   3'- aUAGu---UUGUGCCUACGu-----ACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 166086 0.73 0.952621
Target:  5'- gAUCGA-CACGGAcaacgGCguccgucugaguuGUGCACUCGGa -3'
miRNA:   3'- aUAGUUuGUGCCUa----CG-------------UACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 85318 0.77 0.829823
Target:  5'- cGUCuuuGACugGGGUGCGuuaaagaUGCACUUGGc -3'
miRNA:   3'- aUAGu--UUGugCCUACGU-------ACGUGAGCC- -5'
16692 5' -49 NC_004156.1 + 212104 0.66 0.999693
Target:  5'- --cCGGAUACGGucUGCAcuUGCACaCGGu -3'
miRNA:   3'- auaGUUUGUGCCu-ACGU--ACGUGaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.