miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16700 3' -54.5 NC_004156.1 + 171320 0.66 0.982633
Target:  5'- gAGugUagagACGCAGACUUAuACGcGCGACu -3'
miRNA:   3'- gUCugG----UGCGUCUGAGUcUGC-UGCUG- -5'
16700 3' -54.5 NC_004156.1 + 99575 0.66 0.982633
Target:  5'- aCAGAUCGaauccgGCAGACUCuucgguagAGugGAuCGGCa -3'
miRNA:   3'- -GUCUGGUg-----CGUCUGAG--------UCugCU-GCUG- -5'
16700 3' -54.5 NC_004156.1 + 175755 0.66 0.982633
Target:  5'- uCAGugCAgGCAGA---GGACGugGAa -3'
miRNA:   3'- -GUCugGUgCGUCUgagUCUGCugCUg -5'
16700 3' -54.5 NC_004156.1 + 86910 0.66 0.980629
Target:  5'- uCAGACCuCaCAGAUUCAGAUGuuGAa -3'
miRNA:   3'- -GUCUGGuGcGUCUGAGUCUGCugCUg -5'
16700 3' -54.5 NC_004156.1 + 169902 0.66 0.978457
Target:  5'- -cGACUACcUGGACUCGGACGuuauCGAa -3'
miRNA:   3'- guCUGGUGcGUCUGAGUCUGCu---GCUg -5'
16700 3' -54.5 NC_004156.1 + 130922 0.66 0.97611
Target:  5'- uGGACUGuugaGCAuGCUCAGcgucuGCGACGACg -3'
miRNA:   3'- gUCUGGUg---CGUcUGAGUC-----UGCUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 19532 0.66 0.970863
Target:  5'- gAGGCCAUGgcCAGACUCuuggucaguAGACGcCGAUc -3'
miRNA:   3'- gUCUGGUGC--GUCUGAG---------UCUGCuGCUG- -5'
16700 3' -54.5 NC_004156.1 + 197099 0.67 0.964836
Target:  5'- -cGGCUGCGCAGACUU-GAUucaGCGACa -3'
miRNA:   3'- guCUGGUGCGUCUGAGuCUGc--UGCUG- -5'
16700 3' -54.5 NC_004156.1 + 214184 0.67 0.964836
Target:  5'- -uGACCGUGCAGAUUCAGAguugcCGucuCGGCu -3'
miRNA:   3'- guCUGGUGCGUCUGAGUCU-----GCu--GCUG- -5'
16700 3' -54.5 NC_004156.1 + 41057 0.67 0.964836
Target:  5'- --uGCCAacucUGCAGACgCAGACuGACGAUg -3'
miRNA:   3'- gucUGGU----GCGUCUGaGUCUG-CUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 131659 0.67 0.961517
Target:  5'- gAGACggggACGgAGACUUGGACGGUGACg -3'
miRNA:   3'- gUCUGg---UGCgUCUGAGUCUGCUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 154047 0.67 0.957986
Target:  5'- uCAaACCAuUGUAGAUUCGGACGAUGcCa -3'
miRNA:   3'- -GUcUGGU-GCGUCUGAGUCUGCUGCuG- -5'
16700 3' -54.5 NC_004156.1 + 92004 0.67 0.954239
Target:  5'- gAGGCCaaGCGUAGGCgUCAgguuGACGAUGAg -3'
miRNA:   3'- gUCUGG--UGCGUCUG-AGU----CUGCUGCUg -5'
16700 3' -54.5 NC_004156.1 + 150421 0.68 0.951886
Target:  5'- aGGACgAUGCuAGAUUCAGcauucuaaacauguuGCGugGACa -3'
miRNA:   3'- gUCUGgUGCG-UCUGAGUC---------------UGCugCUG- -5'
16700 3' -54.5 NC_004156.1 + 93548 0.68 0.946085
Target:  5'- aGGAaCACGUcaaacauuAGACUCAGACuGCGAUg -3'
miRNA:   3'- gUCUgGUGCG--------UCUGAGUCUGcUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 40138 0.69 0.916161
Target:  5'- gAGACCACuCAGcaaACUguaCAGACuGACGACg -3'
miRNA:   3'- gUCUGGUGcGUC---UGA---GUCUG-CUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 206722 0.69 0.916161
Target:  5'- -cGACUAUGCAGAgUUuGcCGACGACu -3'
miRNA:   3'- guCUGGUGCGUCUgAGuCuGCUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 164829 0.69 0.898105
Target:  5'- aUAGuuUACGCAGAggCAGuGCGGCGACa -3'
miRNA:   3'- -GUCugGUGCGUCUgaGUC-UGCUGCUG- -5'
16700 3' -54.5 NC_004156.1 + 207250 0.7 0.891637
Target:  5'- gGGAau-CGUAGACUCGGACGAUuACg -3'
miRNA:   3'- gUCUgguGCGUCUGAGUCUGCUGcUG- -5'
16700 3' -54.5 NC_004156.1 + 1644 0.7 0.878046
Target:  5'- uCAGGCCAagucUGCAG-CUCAGGauGCGACu -3'
miRNA:   3'- -GUCUGGU----GCGUCuGAGUCUgcUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.