miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16971 3' -52.7 NC_004323.1 + 124446 0.66 0.980329
Target:  5'- uCGAUaaaGGCG-CGGCGCGCGaauGCAgcUGAUCa -3'
miRNA:   3'- -GCUG---CUGCuGCUGCGCGU---CGU--AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 72073 0.66 0.980329
Target:  5'- gCGACacaACGGCGuACGUGCGGCuGUuaagaauuaAACCg -3'
miRNA:   3'- -GCUGc--UGCUGC-UGCGCGUCG-UA---------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 93671 0.66 0.980329
Target:  5'- gGGCGA-GACG-CGCGUuuuuAGCGUgcuucuGACCa -3'
miRNA:   3'- gCUGCUgCUGCuGCGCG----UCGUA------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 109081 0.66 0.978055
Target:  5'- uGAcCGGCGACGACGguaaaaGUAGCAcaaaUAAUUa -3'
miRNA:   3'- gCU-GCUGCUGCUGCg-----CGUCGU----AUUGG- -5'
16971 3' -52.7 NC_004323.1 + 98746 0.66 0.978055
Target:  5'- gGACGGUGguucgauaaGCGGCGCGCGuGCAUugucaaauACCg -3'
miRNA:   3'- gCUGCUGC---------UGCUGCGCGU-CGUAu-------UGG- -5'
16971 3' -52.7 NC_004323.1 + 74208 0.66 0.975593
Target:  5'- cCGAgcGCGGCGAgGCGguGC-UGGCg -3'
miRNA:   3'- -GCUgcUGCUGCUgCGCguCGuAUUGg -5'
16971 3' -52.7 NC_004323.1 + 75194 0.66 0.970074
Target:  5'- uGAguuUGAUGACGACGCGCcugAUGACa -3'
miRNA:   3'- gCU---GCUGCUGCUGCGCGucgUAUUGg -5'
16971 3' -52.7 NC_004323.1 + 118471 0.66 0.970074
Target:  5'- gGGCGGCGGCcAUGCGUgaaGGCGccgaAACCc -3'
miRNA:   3'- gCUGCUGCUGcUGCGCG---UCGUa---UUGG- -5'
16971 3' -52.7 NC_004323.1 + 79868 0.67 0.967003
Target:  5'- gGAU-AUGAUGAUGCGCAuGUAaAACCg -3'
miRNA:   3'- gCUGcUGCUGCUGCGCGU-CGUaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 103540 0.67 0.963715
Target:  5'- uGugGGCGucgccauguACGGC-CGCGGCugGACCg -3'
miRNA:   3'- gCugCUGC---------UGCUGcGCGUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 81687 0.67 0.963715
Target:  5'- aCGACGugGACuuaaacgaGACGCGUucCAgaaAACCg -3'
miRNA:   3'- -GCUGCugCUG--------CUGCGCGucGUa--UUGG- -5'
16971 3' -52.7 NC_004323.1 + 60026 0.67 0.960205
Target:  5'- gCGACGAaGACGACaGCGaCGGU--GAUCg -3'
miRNA:   3'- -GCUGCUgCUGCUG-CGC-GUCGuaUUGG- -5'
16971 3' -52.7 NC_004323.1 + 46234 0.67 0.960205
Target:  5'- aCGGCGGCGACGAagacauUGCuauGCAUAaaGCUa -3'
miRNA:   3'- -GCUGCUGCUGCUgc----GCGu--CGUAU--UGG- -5'
16971 3' -52.7 NC_004323.1 + 107563 0.67 0.952499
Target:  5'- --uUGACGGCGACGCauucgggcuuuGCGGCGgAGCa -3'
miRNA:   3'- gcuGCUGCUGCUGCG-----------CGUCGUaUUGg -5'
16971 3' -52.7 NC_004323.1 + 65748 0.68 0.943848
Target:  5'- uGACGACGACGgaaACGcCGCcucCGUcGCCg -3'
miRNA:   3'- gCUGCUGCUGC---UGC-GCGuc-GUAuUGG- -5'
16971 3' -52.7 NC_004323.1 + 88459 0.68 0.943848
Target:  5'- --uCGGCGguACGGCGCGCGGUuu--CCa -3'
miRNA:   3'- gcuGCUGC--UGCUGCGCGUCGuauuGG- -5'
16971 3' -52.7 NC_004323.1 + 1049 0.68 0.939161
Target:  5'- uCGAUGACcaGCGGCGUGCcGCAUGcaACg -3'
miRNA:   3'- -GCUGCUGc-UGCUGCGCGuCGUAU--UGg -5'
16971 3' -52.7 NC_004323.1 + 9163 0.68 0.939161
Target:  5'- aCGGCGAUGACGuCGuCGCuGuCGUugucacugGACCa -3'
miRNA:   3'- -GCUGCUGCUGCuGC-GCGuC-GUA--------UUGG- -5'
16971 3' -52.7 NC_004323.1 + 40422 0.68 0.937707
Target:  5'- uCGGCaACGAgGugGCGCgaaucaccaacgacAGCAUGcGCCa -3'
miRNA:   3'- -GCUGcUGCUgCugCGCG--------------UCGUAU-UGG- -5'
16971 3' -52.7 NC_004323.1 + 75370 0.68 0.933723
Target:  5'- aCGACGcguuCGACGACGCGUcuguaaaaaaaugGGCGUucaaauugGACg -3'
miRNA:   3'- -GCUGCu---GCUGCUGCGCG-------------UCGUA--------UUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.