miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16991 5' -53.3 NC_004333.2 + 47922 1.12 0.001061
Target:  5'- gGCGUGACGACCACAUCGAACGGCACGg -3'
miRNA:   3'- -CGCACUGCUGGUGUAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 47832 0.75 0.348043
Target:  5'- aGCGccGACGGgCAUuUCGGGCGGUACGg -3'
miRNA:   3'- -CGCa-CUGCUgGUGuAGCUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 47812 0.7 0.58601
Target:  5'- uCGUGcaGCGcGCCGCcugCGGACGGCGCu -3'
miRNA:   3'- cGCAC--UGC-UGGUGua-GCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 46894 0.67 0.780705
Target:  5'- cGCGUaACGcaACCGCGcCaGGCGGCGCGc -3'
miRNA:   3'- -CGCAcUGC--UGGUGUaGcUUGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 46815 0.74 0.373914
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 46233 0.66 0.837677
Target:  5'- ---aGGCGGcCCGCGUCGc-CGGUGCGg -3'
miRNA:   3'- cgcaCUGCU-GGUGUAGCuuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 45882 0.7 0.597034
Target:  5'- gGCGUGcCGGCCACGguacaCGAcuugcgACGGCAa- -3'
miRNA:   3'- -CGCACuGCUGGUGUa----GCU------UGCCGUgc -5'
16991 5' -53.3 NC_004333.2 + 45522 0.66 0.800439
Target:  5'- gGCGgGGCGccCCGCAuUCGAGCGGUgguggucgcuuuGCGa -3'
miRNA:   3'- -CGCaCUGCu-GGUGU-AGCUUGCCG------------UGC- -5'
16991 5' -53.3 NC_004333.2 + 45412 0.69 0.663483
Target:  5'- uCGUGACGA--ACG-CGAcCGGCACGg -3'
miRNA:   3'- cGCACUGCUggUGUaGCUuGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 45009 0.7 0.601453
Target:  5'- cGCGcUGucCGGCCGC-UCGAccgcgcguggcgcugGCGGCGCGc -3'
miRNA:   3'- -CGC-ACu-GCUGGUGuAGCU---------------UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 44669 0.68 0.718122
Target:  5'- cGCGgcauCGGCacagACGUCGAAgCGGCACa -3'
miRNA:   3'- -CGCacu-GCUGg---UGUAGCUU-GCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 44104 0.66 0.810043
Target:  5'- ---cGGCGACUucGCAUCGuuucgcGGCGGCugGu -3'
miRNA:   3'- cgcaCUGCUGG--UGUAGC------UUGCCGugC- -5'
16991 5' -53.3 NC_004333.2 + 43911 0.69 0.630252
Target:  5'- uUGUGuCGACCgggcGCA-CGAACGuGCGCGg -3'
miRNA:   3'- cGCACuGCUGG----UGUaGCUUGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 43844 0.66 0.810043
Target:  5'- -aGUGAaucUGcACgACAUCGuacGCGGCGCGa -3'
miRNA:   3'- cgCACU---GC-UGgUGUAGCu--UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 43340 0.67 0.760346
Target:  5'- --aUGACGGCCAUcuggcaGAACGaGCGCGa -3'
miRNA:   3'- cgcACUGCUGGUGuag---CUUGC-CGUGC- -5'
16991 5' -53.3 NC_004333.2 + 43313 0.71 0.510386
Target:  5'- aGCGgcGGCaGCgGCAUCGGcACGGCGCGc -3'
miRNA:   3'- -CGCa-CUGcUGgUGUAGCU-UGCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 43072 0.69 0.660167
Target:  5'- aCGUGACGcCgCACAUCGAgacGCgaucaacgaguaucGGCGCGa -3'
miRNA:   3'- cGCACUGCuG-GUGUAGCU---UG--------------CCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42849 0.77 0.251049
Target:  5'- gGCGUGACGAUC-CAgcgCGAA-GGCGCGa -3'
miRNA:   3'- -CGCACUGCUGGuGUa--GCUUgCCGUGC- -5'
16991 5' -53.3 NC_004333.2 + 42324 0.72 0.458936
Target:  5'- gGCGUGGCGugCAUAaauacCGGcCGGCGCu -3'
miRNA:   3'- -CGCACUGCugGUGUa----GCUuGCCGUGc -5'
16991 5' -53.3 NC_004333.2 + 42017 0.72 0.489494
Target:  5'- cGCGUGaagcgcGCGGCCAa--CGAGCGGgGCGu -3'
miRNA:   3'- -CGCAC------UGCUGGUguaGCUUGCCgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.