miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 3' -53.5 NC_004333.2 + 47988 0.71 0.453688
Target:  5'- gCCGGCG-GGCGCacgGGCaguGGACUCGCGc -3'
miRNA:   3'- -GGCCGCaUUGCGa--CUG---CUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 46628 0.68 0.647084
Target:  5'- gCCGGCuucguguucaacgagGUGcCGCUGACGAucacgcugcaggccgACUCGCc- -3'
miRNA:   3'- -GGCCG---------------CAUuGCGACUGCU---------------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 46190 1.08 0.001609
Target:  5'- gCCGGCGUAACGCUGACGAACUCGCAAc -3'
miRNA:   3'- -GGCCGCAUUGCGACUGCUUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 45542 0.66 0.769287
Target:  5'- gCCGGCa-AGCGC-GAUGAACcgCGCGGu -3'
miRNA:   3'- -GGCCGcaUUGCGaCUGCUUGa-GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 45250 0.67 0.716
Target:  5'- uCCGGCaucgaAGCGCgcgUGGCGccuuGGCUCGCGAa -3'
miRNA:   3'- -GGCCGca---UUGCG---ACUGC----UUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 45191 0.69 0.588729
Target:  5'- gCCGGCG-AGCGUcuacggcauuccguUGACGGgcgucacGCUCGCGc -3'
miRNA:   3'- -GGCCGCaUUGCG--------------ACUGCU-------UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 45028 0.81 0.122946
Target:  5'- aCCGcGCGUGGCGCUGGCG-GCgCGCAAa -3'
miRNA:   3'- -GGC-CGCAUUGCGACUGCuUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 43434 0.71 0.474112
Target:  5'- gUCGGUGaaa-GCUGGCGuGCUCGCGGg -3'
miRNA:   3'- -GGCCGCauugCGACUGCuUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 43431 0.68 0.67174
Target:  5'- cUCGG-GUcGgGCUGACGGACgcgCGCAu -3'
miRNA:   3'- -GGCCgCAuUgCGACUGCUUGa--GCGUu -5'
16997 3' -53.5 NC_004333.2 + 42847 0.66 0.748329
Target:  5'- gCGGCGUGACGauccagcGCGAAggCGCGAa -3'
miRNA:   3'- gGCCGCAUUGCgac----UGCUUgaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 40032 0.69 0.570918
Target:  5'- gCGGCGccacGGCGCgGACGc-CUCGCAAg -3'
miRNA:   3'- gGCCGCa---UUGCGaCUGCuuGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 39332 0.69 0.604395
Target:  5'- gCGGCGgcGCGCUucuacGACGcAC-CGCAGg -3'
miRNA:   3'- gGCCGCauUGCGA-----CUGCuUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 38593 0.77 0.232737
Target:  5'- gCCGGC-UGGCGCUGAagguggcggcaaCGAACUCGCc- -3'
miRNA:   3'- -GGCCGcAUUGCGACU------------GCUUGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 38394 0.68 0.644837
Target:  5'- gCCGGCGUGACGCcggccacggucaaGACGGcgaucgagacGCUUGCc- -3'
miRNA:   3'- -GGCCGCAUUGCGa------------CUGCU----------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 37879 0.71 0.484495
Target:  5'- gCCGGUG-AGCGCUucGGCcuGCUCGCGAu -3'
miRNA:   3'- -GGCCGCaUUGCGA--CUGcuUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 37427 0.68 0.660548
Target:  5'- gCGGCGUGcACGUguacugcggcgUGACGAACggCGCc- -3'
miRNA:   3'- gGCCGCAU-UGCG-----------ACUGCUUGa-GCGuu -5'
16997 3' -53.5 NC_004333.2 + 37325 0.67 0.726879
Target:  5'- gCGGCGUcaAGCGCgUGACagcguACUUGCGg -3'
miRNA:   3'- gGCCGCA--UUGCG-ACUGcu---UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 35047 0.69 0.604395
Target:  5'- gCCGGCauca-GCaUGACGcAGCUCGCGAu -3'
miRNA:   3'- -GGCCGcauugCG-ACUGC-UUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 33063 0.66 0.77955
Target:  5'- gUCGGCcacgAGCGCUGGC-AACUCGg-- -3'
miRNA:   3'- -GGCCGca--UUGCGACUGcUUGAGCguu -5'
16997 3' -53.5 NC_004333.2 + 32887 0.66 0.758875
Target:  5'- cCCGGUGcUGAUGCUGACcgcgccGC-CGCAGc -3'
miRNA:   3'- -GGCCGC-AUUGCGACUGcu----UGaGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.