miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 3' -53.5 NC_004333.2 + 45028 0.81 0.122946
Target:  5'- aCCGcGCGUGGCGCUGGCG-GCgCGCAAa -3'
miRNA:   3'- -GGC-CGCAUUGCGACUGCuUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 12291 0.66 0.748329
Target:  5'- aCCGGCGgcGCGCauugcGGCGucCUgCGCGc -3'
miRNA:   3'- -GGCCGCauUGCGa----CUGCuuGA-GCGUu -5'
16997 3' -53.5 NC_004333.2 + 32534 0.66 0.758875
Target:  5'- gCCGaCGUcGCGC-GGCGcGCUCGCGu -3'
miRNA:   3'- -GGCcGCAuUGCGaCUGCuUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 8304 0.66 0.789655
Target:  5'- -aGGCGgcGCGCg---GGGCUCGCGc -3'
miRNA:   3'- ggCCGCauUGCGacugCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 20732 0.7 0.537908
Target:  5'- aCGGCGcgcGCGCUGcCGGACaUCGCc- -3'
miRNA:   3'- gGCCGCau-UGCGACuGCUUG-AGCGuu -5'
16997 3' -53.5 NC_004333.2 + 40032 0.69 0.570918
Target:  5'- gCGGCGccacGGCGCgGACGc-CUCGCAAg -3'
miRNA:   3'- gGCCGCa---UUGCGaCUGCuuGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 38394 0.68 0.644837
Target:  5'- gCCGGCGUGACGCcggccacggucaaGACGGcgaucgagacGCUUGCc- -3'
miRNA:   3'- -GGCCGCAUUGCGa------------CUGCU----------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 37427 0.68 0.660548
Target:  5'- gCGGCGUGcACGUguacugcggcgUGACGAACggCGCc- -3'
miRNA:   3'- gGCCGCAU-UGCG-----------ACUGCUUGa-GCGuu -5'
16997 3' -53.5 NC_004333.2 + 29884 0.68 0.67174
Target:  5'- gUCGGCGaAGCGCUGcGCGAucggGC-CGCGc -3'
miRNA:   3'- -GGCCGCaUUGCGAC-UGCU----UGaGCGUu -5'
16997 3' -53.5 NC_004333.2 + 22875 0.67 0.737659
Target:  5'- aUCGGCGcgaucguacUGGCGCucgUGACGAGCagaagCGCGGu -3'
miRNA:   3'- -GGCCGC---------AUUGCG---ACUGCUUGa----GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 25292 0.67 0.693995
Target:  5'- uUCGGCGUcgcaaccgggccGACGCcGGCGAcuGC-CGCGAc -3'
miRNA:   3'- -GGCCGCA------------UUGCGaCUGCU--UGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 43431 0.68 0.67174
Target:  5'- cUCGG-GUcGgGCUGACGGACgcgCGCAu -3'
miRNA:   3'- -GGCCgCAuUgCGACUGCUUGa--GCGUu -5'
16997 3' -53.5 NC_004333.2 + 19494 0.74 0.333935
Target:  5'- aUCGGCGcUGgcGCGCUGGCGGcGCUCGUg- -3'
miRNA:   3'- -GGCCGC-AU--UGCGACUGCU-UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 32450 0.67 0.693995
Target:  5'- cUCGGCGcccuucAGCGCcgcGACGAGC-CGCAGc -3'
miRNA:   3'- -GGCCGCa-----UUGCGa--CUGCUUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 37879 0.71 0.484495
Target:  5'- gCCGGUG-AGCGCUucGGCcuGCUCGCGAu -3'
miRNA:   3'- -GGCCGCaUUGCGA--CUGcuUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 16557 0.68 0.665029
Target:  5'- cCCGGCGUccgucACGCUGuCGAaaggcaugccggacaACUCGUc- -3'
miRNA:   3'- -GGCCGCAu----UGCGACuGCU---------------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 45250 0.67 0.716
Target:  5'- uCCGGCaucgaAGCGCgcgUGGCGccuuGGCUCGCGAa -3'
miRNA:   3'- -GGCCGca---UUGCG---ACUGC----UUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 19273 0.66 0.758875
Target:  5'- uCCGGCGaccUggUGCUGcucGCGAGCaaGCAc -3'
miRNA:   3'- -GGCCGC---AuuGCGAC---UGCUUGagCGUu -5'
16997 3' -53.5 NC_004333.2 + 2654 0.71 0.484495
Target:  5'- gCCGGCGUAucagccgcaACGCcGGC-AGCUUGCAGc -3'
miRNA:   3'- -GGCCGCAU---------UGCGaCUGcUUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 39332 0.69 0.604395
Target:  5'- gCGGCGgcGCGCUucuacGACGcAC-CGCAGg -3'
miRNA:   3'- gGCCGCauUGCGA-----CUGCuUGaGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.