Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16997 | 3' | -53.5 | NC_004333.2 | + | 35047 | 0.69 | 0.604395 |
Target: 5'- gCCGGCauca-GCaUGACGcAGCUCGCGAu -3' miRNA: 3'- -GGCCGcauugCG-ACUGC-UUGAGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 372 | 0.67 | 0.705034 |
Target: 5'- -aGGCGgcGCGCUGcACGAucaGCcUGCGAu -3' miRNA: 3'- ggCCGCauUGCGAC-UGCU---UGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 22285 | 0.67 | 0.693995 |
Target: 5'- gCGGCGaAGCGC-GGCGcuuggcGCUCGCGc -3' miRNA: 3'- gGCCGCaUUGCGaCUGCu-----UGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 5627 | 0.68 | 0.682893 |
Target: 5'- -aGGcCGUGAUGCccguugacGGCGAACUCGUAc -3' miRNA: 3'- ggCC-GCAUUGCGa-------CUGCUUGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 6628 | 0.68 | 0.67174 |
Target: 5'- gCCGGuCGUgagcaucgcGACGCUGACGAugU-GCc- -3' miRNA: 3'- -GGCC-GCA---------UUGCGACUGCUugAgCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 46628 | 0.68 | 0.647084 |
Target: 5'- gCCGGCuucguguucaacgagGUGcCGCUGACGAucacgcugcaggccgACUCGCc- -3' miRNA: 3'- -GGCCG---------------CAUuGCGACUGCU---------------UGAGCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 20389 | 0.68 | 0.634722 |
Target: 5'- cUCGGCGgacacgaccgacuacAUGCUGACGAACgugCGCc- -3' miRNA: 3'- -GGCCGCau-------------UGCGACUGCUUGa--GCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 27532 | 0.68 | 0.626853 |
Target: 5'- aCUGGCGcAGCGCcGuuGCGAcGCUCGCGu -3' miRNA: 3'- -GGCCGCaUUGCGaC--UGCU-UGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 9791 | 0.69 | 0.615617 |
Target: 5'- gCCGGCGUcACGCcGGCGcacccGACaCGCGAc -3' miRNA: 3'- -GGCCGCAuUGCGaCUGC-----UUGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 20081 | 0.67 | 0.705034 |
Target: 5'- uUCGGCGUGcCGCUcgacacGAUGAACcagaUCGCGc -3' miRNA: 3'- -GGCCGCAUuGCGA------CUGCUUG----AGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 16660 | 0.67 | 0.716 |
Target: 5'- aCUGGuCGUGACGCU--CGAACUagacgCGCGAc -3' miRNA: 3'- -GGCC-GCAUUGCGAcuGCUUGA-----GCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 19537 | 0.67 | 0.716 |
Target: 5'- uCCGGCGacuugGGCGCUcaucaGCGAGCUgGUAc -3' miRNA: 3'- -GGCCGCa----UUGCGAc----UGCUUGAgCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 11008 | 0.66 | 0.769287 |
Target: 5'- gCGGCGUGucgccGCGCUG-CGGgauGC-CGCAc -3' miRNA: 3'- gGCCGCAU-----UGCGACuGCU---UGaGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 45542 | 0.66 | 0.769287 |
Target: 5'- gCCGGCa-AGCGC-GAUGAACcgCGCGGu -3' miRNA: 3'- -GGCCGcaUUGCGaCUGCUUGa-GCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 32887 | 0.66 | 0.758875 |
Target: 5'- cCCGGUGcUGAUGCUGACcgcgccGC-CGCAGc -3' miRNA: 3'- -GGCCGC-AUUGCGACUGcu----UGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 42847 | 0.66 | 0.748329 |
Target: 5'- gCGGCGUGACGauccagcGCGAAggCGCGAa -3' miRNA: 3'- gGCCGCAUUGCgac----UGCUUgaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 37325 | 0.67 | 0.726879 |
Target: 5'- gCGGCGUcaAGCGCgUGACagcguACUUGCGg -3' miRNA: 3'- gGCCGCA--UUGCG-ACUGcu---UGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 24790 | 0.67 | 0.726879 |
Target: 5'- aCGGCGUGAcCGCccuguccggacUGACGGGCg-GCAc -3' miRNA: 3'- gGCCGCAUU-GCG-----------ACUGCUUGagCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 21526 | 0.67 | 0.726879 |
Target: 5'- gCCGGCGcgaucACGCUcACGAGCggcggUGCGAc -3' miRNA: 3'- -GGCCGCau---UGCGAcUGCUUGa----GCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 1020 | 0.67 | 0.716 |
Target: 5'- uCCGGCGUcaGAUGCgcaucgggGACGAA--CGCGAu -3' miRNA: 3'- -GGCCGCA--UUGCGa-------CUGCUUgaGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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