miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 3' -53.5 NC_004333.2 + 372 0.67 0.705034
Target:  5'- -aGGCGgcGCGCUGcACGAucaGCcUGCGAu -3'
miRNA:   3'- ggCCGCauUGCGAC-UGCU---UGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 1020 0.67 0.716
Target:  5'- uCCGGCGUcaGAUGCgcaucgggGACGAA--CGCGAu -3'
miRNA:   3'- -GGCCGCA--UUGCGa-------CUGCUUgaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 2654 0.71 0.484495
Target:  5'- gCCGGCGUAucagccgcaACGCcGGC-AGCUUGCAGc -3'
miRNA:   3'- -GGCCGCAU---------UGCGaCUGcUUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 5498 0.7 0.516268
Target:  5'- gCCGGCGUGgagacgaucgGCGCUGuuGCGGgcuGCUCGaCGGg -3'
miRNA:   3'- -GGCCGCAU----------UGCGAC--UGCU---UGAGC-GUU- -5'
16997 3' -53.5 NC_004333.2 + 5627 0.68 0.682893
Target:  5'- -aGGcCGUGAUGCccguugacGGCGAACUCGUAc -3'
miRNA:   3'- ggCC-GCAUUGCGa-------CUGCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 6628 0.68 0.67174
Target:  5'- gCCGGuCGUgagcaucgcGACGCUGACGAugU-GCc- -3'
miRNA:   3'- -GGCC-GCA---------UUGCGACUGCUugAgCGuu -5'
16997 3' -53.5 NC_004333.2 + 8304 0.66 0.789655
Target:  5'- -aGGCGgcGCGCg---GGGCUCGCGc -3'
miRNA:   3'- ggCCGCauUGCGacugCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 8647 0.66 0.769287
Target:  5'- cUCGGCGcGGCGCccGGCuuGCUCGUGAc -3'
miRNA:   3'- -GGCCGCaUUGCGa-CUGcuUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 9791 0.69 0.615617
Target:  5'- gCCGGCGUcACGCcGGCGcacccGACaCGCGAc -3'
miRNA:   3'- -GGCCGCAuUGCGaCUGC-----UUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 9930 0.75 0.279717
Target:  5'- -gGGCGUGcaucACGUUGACGAACggCGCGg -3'
miRNA:   3'- ggCCGCAU----UGCGACUGCUUGa-GCGUu -5'
16997 3' -53.5 NC_004333.2 + 11008 0.66 0.769287
Target:  5'- gCGGCGUGucgccGCGCUG-CGGgauGC-CGCAc -3'
miRNA:   3'- gGCCGCAU-----UGCGACuGCU---UGaGCGUu -5'
16997 3' -53.5 NC_004333.2 + 11711 0.66 0.77955
Target:  5'- gCCgGGCGgcGUGCUGGCGucCUgCGCGAu -3'
miRNA:   3'- -GG-CCGCauUGCGACUGCuuGA-GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 12291 0.66 0.748329
Target:  5'- aCCGGCGgcGCGCauugcGGCGucCUgCGCGc -3'
miRNA:   3'- -GGCCGCauUGCGa----CUGCuuGA-GCGUu -5'
16997 3' -53.5 NC_004333.2 + 14725 0.75 0.279717
Target:  5'- cCCGGCGcgccgcugccAAUGCUGcCGGACUCGCGg -3'
miRNA:   3'- -GGCCGCa---------UUGCGACuGCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 15429 0.71 0.474112
Target:  5'- gCCGGCGgcagcgaccuGCGCgUGACGuucuGCUCGCc- -3'
miRNA:   3'- -GGCCGCau--------UGCG-ACUGCu---UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 16557 0.68 0.665029
Target:  5'- cCCGGCGUccgucACGCUGuCGAaaggcaugccggacaACUCGUc- -3'
miRNA:   3'- -GGCCGCAu----UGCGACuGCU---------------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 16660 0.67 0.716
Target:  5'- aCUGGuCGUGACGCU--CGAACUagacgCGCGAc -3'
miRNA:   3'- -GGCC-GCAUUGCGAcuGCUUGA-----GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 17236 0.72 0.433752
Target:  5'- gCCGGCGUAuCGCcgGACGuGAUcgUCGCGAu -3'
miRNA:   3'- -GGCCGCAUuGCGa-CUGC-UUG--AGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 17857 0.72 0.404828
Target:  5'- gCCGcGCGUAugGCgGGUGGugUCGCAGg -3'
miRNA:   3'- -GGC-CGCAUugCGaCUGCUugAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 19273 0.66 0.758875
Target:  5'- uCCGGCGaccUggUGCUGcucGCGAGCaaGCAc -3'
miRNA:   3'- -GGCCGC---AuuGCGAC---UGCUUGagCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.