miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 3' -53.5 NC_004333.2 + 19494 0.74 0.333935
Target:  5'- aUCGGCGcUGgcGCGCUGGCGGcGCUCGUg- -3'
miRNA:   3'- -GGCCGC-AU--UGCGACUGCU-UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 19537 0.67 0.716
Target:  5'- uCCGGCGacuugGGCGCUcaucaGCGAGCUgGUAc -3'
miRNA:   3'- -GGCCGCa----UUGCGAc----UGCUUGAgCGUu -5'
16997 3' -53.5 NC_004333.2 + 20081 0.67 0.705034
Target:  5'- uUCGGCGUGcCGCUcgacacGAUGAACcagaUCGCGc -3'
miRNA:   3'- -GGCCGCAUuGCGA------CUGCUUG----AGCGUu -5'
16997 3' -53.5 NC_004333.2 + 20389 0.68 0.634722
Target:  5'- cUCGGCGgacacgaccgacuacAUGCUGACGAACgugCGCc- -3'
miRNA:   3'- -GGCCGCau-------------UGCGACUGCUUGa--GCGuu -5'
16997 3' -53.5 NC_004333.2 + 20732 0.7 0.537908
Target:  5'- aCGGCGcgcGCGCUGcCGGACaUCGCc- -3'
miRNA:   3'- gGCCGCau-UGCGACuGCUUG-AGCGuu -5'
16997 3' -53.5 NC_004333.2 + 21526 0.67 0.726879
Target:  5'- gCCGGCGcgaucACGCUcACGAGCggcggUGCGAc -3'
miRNA:   3'- -GGCCGCau---UGCGAcUGCUUGa----GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 22285 0.67 0.693995
Target:  5'- gCGGCGaAGCGC-GGCGcuuggcGCUCGCGc -3'
miRNA:   3'- gGCCGCaUUGCGaCUGCu-----UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 22527 0.72 0.413378
Target:  5'- gCCGGCaagAcgcuuucgaccGCGCUGACGAcgccgcaagggcaACUCGCAAg -3'
miRNA:   3'- -GGCCGca-U-----------UGCGACUGCU-------------UGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 22752 0.73 0.37177
Target:  5'- cCCGGCGUGacggccgccgccggcACGCUGcagGCGcGCUCGCc- -3'
miRNA:   3'- -GGCCGCAU---------------UGCGAC---UGCuUGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 22875 0.67 0.737659
Target:  5'- aUCGGCGcgaucguacUGGCGCucgUGACGAGCagaagCGCGGu -3'
miRNA:   3'- -GGCCGC---------AUUGCG---ACUGCUUGa----GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 23193 0.76 0.252006
Target:  5'- gCGGCGcgGACGCaGACGuugcGCUCGCGAu -3'
miRNA:   3'- gGCCGCa-UUGCGaCUGCu---UGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 24790 0.67 0.726879
Target:  5'- aCGGCGUGAcCGCccuguccggacUGACGGGCg-GCAc -3'
miRNA:   3'- gGCCGCAUU-GCG-----------ACUGCUUGagCGUu -5'
16997 3' -53.5 NC_004333.2 + 25292 0.67 0.693995
Target:  5'- uUCGGCGUcgcaaccgggccGACGCcGGCGAcuGC-CGCGAc -3'
miRNA:   3'- -GGCCGCA------------UUGCGaCUGCU--UGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 27532 0.68 0.626853
Target:  5'- aCUGGCGcAGCGCcGuuGCGAcGCUCGCGu -3'
miRNA:   3'- -GGCCGCaUUGCGaC--UGCU-UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 28431 0.67 0.692887
Target:  5'- gCCGGUGUcGCGCUGAuucauguacuuguCGGGC-CGCc- -3'
miRNA:   3'- -GGCCGCAuUGCGACU-------------GCUUGaGCGuu -5'
16997 3' -53.5 NC_004333.2 + 29884 0.68 0.67174
Target:  5'- gUCGGCGaAGCGCUGcGCGAucggGC-CGCGc -3'
miRNA:   3'- -GGCCGCaUUGCGAC-UGCU----UGaGCGUu -5'
16997 3' -53.5 NC_004333.2 + 30972 0.66 0.788652
Target:  5'- gCGGCaGUGAuCGCccgcGACGAuaaacagaucgggGCUCGCAGc -3'
miRNA:   3'- gGCCG-CAUU-GCGa---CUGCU-------------UGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 31378 0.69 0.593199
Target:  5'- cCCGGCGgGAUGagugaaaUGAUGAAgUCGCGGu -3'
miRNA:   3'- -GGCCGCaUUGCg------ACUGCUUgAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 32306 0.78 0.197918
Target:  5'- aCGGCGgcuCGCUcGCGGGCUCGCAc -3'
miRNA:   3'- gGCCGCauuGCGAcUGCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 32450 0.67 0.693995
Target:  5'- cUCGGCGcccuucAGCGCcgcGACGAGC-CGCAGc -3'
miRNA:   3'- -GGCCGCa-----UUGCGa--CUGCUUGaGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.