miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 3' -53.5 NC_004333.2 + 39332 0.69 0.604395
Target:  5'- gCGGCGgcGCGCUucuacGACGcAC-CGCAGg -3'
miRNA:   3'- gGCCGCauUGCGA-----CUGCuUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 32534 0.66 0.758875
Target:  5'- gCCGaCGUcGCGC-GGCGcGCUCGCGu -3'
miRNA:   3'- -GGCcGCAuUGCGaCUGCuUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 32450 0.67 0.693995
Target:  5'- cUCGGCGcccuucAGCGCcgcGACGAGC-CGCAGc -3'
miRNA:   3'- -GGCCGCa-----UUGCGa--CUGCUUGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 38394 0.68 0.644837
Target:  5'- gCCGGCGUGACGCcggccacggucaaGACGGcgaucgagacGCUUGCc- -3'
miRNA:   3'- -GGCCGCAUUGCGa------------CUGCU----------UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 24790 0.67 0.726879
Target:  5'- aCGGCGUGAcCGCccuguccggacUGACGGGCg-GCAc -3'
miRNA:   3'- gGCCGCAUU-GCG-----------ACUGCUUGagCGUu -5'
16997 3' -53.5 NC_004333.2 + 5627 0.68 0.682893
Target:  5'- -aGGcCGUGAUGCccguugacGGCGAACUCGUAc -3'
miRNA:   3'- ggCC-GCAUUGCGa-------CUGCUUGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 45542 0.66 0.769287
Target:  5'- gCCGGCa-AGCGC-GAUGAACcgCGCGGu -3'
miRNA:   3'- -GGCCGcaUUGCGaCUGCUUGa-GCGUU- -5'
16997 3' -53.5 NC_004333.2 + 17857 0.72 0.404828
Target:  5'- gCCGcGCGUAugGCgGGUGGugUCGCAGg -3'
miRNA:   3'- -GGC-CGCAUugCGaCUGCUugAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 22527 0.72 0.413378
Target:  5'- gCCGGCaagAcgcuuucgaccGCGCUGACGAcgccgcaagggcaACUCGCAAg -3'
miRNA:   3'- -GGCCGca-U-----------UGCGACUGCU-------------UGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 17236 0.72 0.433752
Target:  5'- gCCGGCGUAuCGCcgGACGuGAUcgUCGCGAu -3'
miRNA:   3'- -GGCCGCAUuGCGa-CUGC-UUG--AGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 22285 0.67 0.693995
Target:  5'- gCGGCGaAGCGC-GGCGcuuggcGCUCGCGc -3'
miRNA:   3'- gGCCGCaUUGCGaCUGCu-----UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 372 0.67 0.705034
Target:  5'- -aGGCGgcGCGCUGcACGAucaGCcUGCGAu -3'
miRNA:   3'- ggCCGCauUGCGAC-UGCU---UGaGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 20081 0.67 0.705034
Target:  5'- uUCGGCGUGcCGCUcgacacGAUGAACcagaUCGCGc -3'
miRNA:   3'- -GGCCGCAUuGCGA------CUGCUUG----AGCGUu -5'
16997 3' -53.5 NC_004333.2 + 37325 0.67 0.726879
Target:  5'- gCGGCGUcaAGCGCgUGACagcguACUUGCGg -3'
miRNA:   3'- gGCCGCA--UUGCG-ACUGcu---UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 31378 0.69 0.593199
Target:  5'- cCCGGCGgGAUGagugaaaUGAUGAAgUCGCGGu -3'
miRNA:   3'- -GGCCGCaUUGCg------ACUGCUUgAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 45191 0.69 0.588729
Target:  5'- gCCGGCG-AGCGUcuacggcauuccguUGACGGgcgucacGCUCGCGc -3'
miRNA:   3'- -GGCCGCaUUGCG--------------ACUGCU-------UGAGCGUu -5'
16997 3' -53.5 NC_004333.2 + 5498 0.7 0.516268
Target:  5'- gCCGGCGUGgagacgaucgGCGCUGuuGCGGgcuGCUCGaCGGg -3'
miRNA:   3'- -GGCCGCAU----------UGCGAC--UGCU---UGAGC-GUU- -5'
16997 3' -53.5 NC_004333.2 + 15429 0.71 0.474112
Target:  5'- gCCGGCGgcagcgaccuGCGCgUGACGuucuGCUCGCc- -3'
miRNA:   3'- -GGCCGCau--------UGCG-ACUGCu---UGAGCGuu -5'
16997 3' -53.5 NC_004333.2 + 43434 0.71 0.474112
Target:  5'- gUCGGUGaaa-GCUGGCGuGCUCGCGGg -3'
miRNA:   3'- -GGCCGCauugCGACUGCuUGAGCGUU- -5'
16997 3' -53.5 NC_004333.2 + 47988 0.71 0.453688
Target:  5'- gCCGGCG-GGCGCacgGGCaguGGACUCGCGc -3'
miRNA:   3'- -GGCCGCaUUGCGa--CUG---CUUGAGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.