Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16997 | 3' | -53.5 | NC_004333.2 | + | 20081 | 0.67 | 0.705034 |
Target: 5'- uUCGGCGUGcCGCUcgacacGAUGAACcagaUCGCGc -3' miRNA: 3'- -GGCCGCAUuGCGA------CUGCUUG----AGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 372 | 0.67 | 0.705034 |
Target: 5'- -aGGCGgcGCGCUGcACGAucaGCcUGCGAu -3' miRNA: 3'- ggCCGCauUGCGAC-UGCU---UGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 22285 | 0.67 | 0.693995 |
Target: 5'- gCGGCGaAGCGC-GGCGcuuggcGCUCGCGc -3' miRNA: 3'- gGCCGCaUUGCGaCUGCu-----UGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 25292 | 0.67 | 0.693995 |
Target: 5'- uUCGGCGUcgcaaccgggccGACGCcGGCGAcuGC-CGCGAc -3' miRNA: 3'- -GGCCGCA------------UUGCGaCUGCU--UGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 32450 | 0.67 | 0.693995 |
Target: 5'- cUCGGCGcccuucAGCGCcgcGACGAGC-CGCAGc -3' miRNA: 3'- -GGCCGCa-----UUGCGa--CUGCUUGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 28431 | 0.67 | 0.692887 |
Target: 5'- gCCGGUGUcGCGCUGAuucauguacuuguCGGGC-CGCc- -3' miRNA: 3'- -GGCCGCAuUGCGACU-------------GCUUGaGCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 5627 | 0.68 | 0.682893 |
Target: 5'- -aGGcCGUGAUGCccguugacGGCGAACUCGUAc -3' miRNA: 3'- ggCC-GCAUUGCGa-------CUGCUUGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 43431 | 0.68 | 0.67174 |
Target: 5'- cUCGG-GUcGgGCUGACGGACgcgCGCAu -3' miRNA: 3'- -GGCCgCAuUgCGACUGCUUGa--GCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 29884 | 0.68 | 0.67174 |
Target: 5'- gUCGGCGaAGCGCUGcGCGAucggGC-CGCGc -3' miRNA: 3'- -GGCCGCaUUGCGAC-UGCU----UGaGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 6628 | 0.68 | 0.67174 |
Target: 5'- gCCGGuCGUgagcaucgcGACGCUGACGAugU-GCc- -3' miRNA: 3'- -GGCC-GCA---------UUGCGACUGCUugAgCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 16557 | 0.68 | 0.665029 |
Target: 5'- cCCGGCGUccgucACGCUGuCGAaaggcaugccggacaACUCGUc- -3' miRNA: 3'- -GGCCGCAu----UGCGACuGCU---------------UGAGCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 37427 | 0.68 | 0.660548 |
Target: 5'- gCGGCGUGcACGUguacugcggcgUGACGAACggCGCc- -3' miRNA: 3'- gGCCGCAU-UGCG-----------ACUGCUUGa-GCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 46628 | 0.68 | 0.647084 |
Target: 5'- gCCGGCuucguguucaacgagGUGcCGCUGACGAucacgcugcaggccgACUCGCc- -3' miRNA: 3'- -GGCCG---------------CAUuGCGACUGCU---------------UGAGCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 38394 | 0.68 | 0.644837 |
Target: 5'- gCCGGCGUGACGCcggccacggucaaGACGGcgaucgagacGCUUGCc- -3' miRNA: 3'- -GGCCGCAUUGCGa------------CUGCU----------UGAGCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 20389 | 0.68 | 0.634722 |
Target: 5'- cUCGGCGgacacgaccgacuacAUGCUGACGAACgugCGCc- -3' miRNA: 3'- -GGCCGCau-------------UGCGACUGCUUGa--GCGuu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 27532 | 0.68 | 0.626853 |
Target: 5'- aCUGGCGcAGCGCcGuuGCGAcGCUCGCGu -3' miRNA: 3'- -GGCCGCaUUGCGaC--UGCU-UGAGCGUu -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 9791 | 0.69 | 0.615617 |
Target: 5'- gCCGGCGUcACGCcGGCGcacccGACaCGCGAc -3' miRNA: 3'- -GGCCGCAuUGCGaCUGC-----UUGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 35047 | 0.69 | 0.604395 |
Target: 5'- gCCGGCauca-GCaUGACGcAGCUCGCGAu -3' miRNA: 3'- -GGCCGcauugCG-ACUGC-UUGAGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 39332 | 0.69 | 0.604395 |
Target: 5'- gCGGCGgcGCGCUucuacGACGcAC-CGCAGg -3' miRNA: 3'- gGCCGCauUGCGA-----CUGCuUGaGCGUU- -5' |
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16997 | 3' | -53.5 | NC_004333.2 | + | 31378 | 0.69 | 0.593199 |
Target: 5'- cCCGGCGgGAUGagugaaaUGAUGAAgUCGCGGu -3' miRNA: 3'- -GGCCGCaUUGCg------ACUGCUUgAGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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