miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16998 3' -53.6 NC_004333.2 + 13749 0.66 0.805662
Target:  5'- uCGAGcGCGuaggacGC-CGCGcGCcGCUCGCg -3'
miRNA:   3'- -GCUC-CGCua----CGaGCGCaUGuUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 32394 0.66 0.805662
Target:  5'- uCGGGGUucucGGUGUcggcccgcgccUCGC--GCAGCUCGCu -3'
miRNA:   3'- -GCUCCG----CUACG-----------AGCGcaUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 39110 0.66 0.795911
Target:  5'- gCGAGGCGcucacGCagaUCgGCGUcgACGugUCGCa -3'
miRNA:   3'- -GCUCCGCua---CG---AG-CGCA--UGUugAGCG- -5'
16998 3' -53.6 NC_004333.2 + 19510 0.66 0.795911
Target:  5'- --uGGCGgcGCUCGUGgccguauggGCAAUcguUCGCa -3'
miRNA:   3'- gcuCCGCuaCGAGCGCa--------UGUUG---AGCG- -5'
16998 3' -53.6 NC_004333.2 + 7425 0.66 0.785985
Target:  5'- ---cGCGAUGCgcucgaucagcaUCGCGUucaggaGCGACUUGCc -3'
miRNA:   3'- gcucCGCUACG------------AGCGCA------UGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 35408 0.66 0.785985
Target:  5'- gCGaAGGCGAgaUUCGCGUcugguACGACUaCGUg -3'
miRNA:   3'- -GC-UCCGCUacGAGCGCA-----UGUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 40008 0.66 0.785985
Target:  5'- uGAGuacGCGAUGgaCGCGgcCGACcugUCGCc -3'
miRNA:   3'- gCUC---CGCUACgaGCGCauGUUG---AGCG- -5'
16998 3' -53.6 NC_004333.2 + 32205 0.66 0.785985
Target:  5'- aCGAGcGCGAUGagcacgUCGCcgagcgucUugAGCUCGCg -3'
miRNA:   3'- -GCUC-CGCUACg-----AGCGc-------AugUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 36052 0.66 0.775894
Target:  5'- aCGAcGGCGA-GCUCGU--GCcGCUCGg -3'
miRNA:   3'- -GCU-CCGCUaCGAGCGcaUGuUGAGCg -5'
16998 3' -53.6 NC_004333.2 + 4607 0.66 0.775894
Target:  5'- uCGAGGCGA-GCgCGCGacacgccauuaaUGCGAUcaggCGCg -3'
miRNA:   3'- -GCUCCGCUaCGaGCGC------------AUGUUGa---GCG- -5'
16998 3' -53.6 NC_004333.2 + 44391 0.66 0.765651
Target:  5'- --cGGCGgcGCgugCGCGgUACAacggccugccggGCUCGCu -3'
miRNA:   3'- gcuCCGCuaCGa--GCGC-AUGU------------UGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 18808 0.66 0.764618
Target:  5'- -cGGGCGAcgagccGCUugaagugCGCGUGCGACagCGCa -3'
miRNA:   3'- gcUCCGCUa-----CGA-------GCGCAUGUUGa-GCG- -5'
16998 3' -53.6 NC_004333.2 + 37322 0.66 0.755266
Target:  5'- uCGcGGCGGUGCUCGaCGcGCucgaaucuGCgUCGCc -3'
miRNA:   3'- -GCuCCGCUACGAGC-GCaUGu-------UG-AGCG- -5'
16998 3' -53.6 NC_004333.2 + 45101 0.66 0.755266
Target:  5'- gCGAGGCGAUaCUCGaCGccugucugcGCGGCgaUCGCg -3'
miRNA:   3'- -GCUCCGCUAcGAGC-GCa--------UGUUG--AGCG- -5'
16998 3' -53.6 NC_004333.2 + 27544 0.66 0.755266
Target:  5'- cCGuuGCGAcGCUCGCGUcgaauuggccCGACUgCGCg -3'
miRNA:   3'- -GCucCGCUaCGAGCGCAu---------GUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 16160 0.67 0.744752
Target:  5'- uGGGGCGA-GUUCGaugucaaGUACGAgUaCGCg -3'
miRNA:   3'- gCUCCGCUaCGAGCg------CAUGUUgA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 24592 0.67 0.744752
Target:  5'- gGuGGaUGAUGCUCgGCG-GCGGCUuCGCu -3'
miRNA:   3'- gCuCC-GCUACGAG-CGCaUGUUGA-GCG- -5'
16998 3' -53.6 NC_004333.2 + 21629 0.67 0.73412
Target:  5'- aGAccGGCGcggGCUC-CGUGCAGUUCGCc -3'
miRNA:   3'- gCU--CCGCua-CGAGcGCAUGUUGAGCG- -5'
16998 3' -53.6 NC_004333.2 + 11855 0.67 0.73412
Target:  5'- cCGuAGGCGAUGCgaCGCccgGCGACUacucgggcggCGCg -3'
miRNA:   3'- -GC-UCCGCUACGa-GCGca-UGUUGA----------GCG- -5'
16998 3' -53.6 NC_004333.2 + 47498 0.67 0.73412
Target:  5'- aCGAGGCGccgGCcggCGCGaccagUACAuugaaugcACUCGCc -3'
miRNA:   3'- -GCUCCGCua-CGa--GCGC-----AUGU--------UGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.