miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17000 5' -60.3 NC_004333.2 + 19527 0.66 0.466085
Target:  5'- gCGaCCGCGAUC-CGGCgacu-UGGGCg -3'
miRNA:   3'- -GCcGGCGCUAGaGCCGacacuGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 24961 0.66 0.466085
Target:  5'- -cGCCGUGAUCaagacggCGGCggGU-ACGGGUa -3'
miRNA:   3'- gcCGGCGCUAGa------GCCGa-CAcUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 31191 0.66 0.460284
Target:  5'- -uGCCGCGAguugcgcguucgguuUCUCGGCUGUaccGACGu-- -3'
miRNA:   3'- gcCGGCGCU---------------AGAGCCGACA---CUGCccg -5'
17000 5' -60.3 NC_004333.2 + 38385 0.66 0.459321
Target:  5'- aCGGCCG-GAUgaCGGCuauccguggcaaccaUGUggcgcucguugacGACGGGCg -3'
miRNA:   3'- -GCCGGCgCUAgaGCCG---------------ACA-------------CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 20556 0.66 0.456438
Target:  5'- cCGcGCCGCuGAUCgUCGGCgc-GuCGGGUc -3'
miRNA:   3'- -GC-CGGCG-CUAG-AGCCGacaCuGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 849 0.66 0.456438
Target:  5'- -aGCUuCGAUCUCGGCUuucGUG-CGGcGCu -3'
miRNA:   3'- gcCGGcGCUAGAGCCGA---CACuGCC-CG- -5'
17000 5' -60.3 NC_004333.2 + 17854 0.66 0.456438
Target:  5'- gCGGCCGCGcgUaUGGCgggugGUGucGCaGGCg -3'
miRNA:   3'- -GCCGGCGCuaGaGCCGa----CAC--UGcCCG- -5'
17000 5' -60.3 NC_004333.2 + 5038 0.66 0.437472
Target:  5'- gCGGCCagGCGG-C-CGGCUGUuggccgacgucGGCGcGGCg -3'
miRNA:   3'- -GCCGG--CGCUaGaGCCGACA-----------CUGC-CCG- -5'
17000 5' -60.3 NC_004333.2 + 21509 0.66 0.409893
Target:  5'- uGG-CGUGAUUUCa-CUGUcGACGGGCg -3'
miRNA:   3'- gCCgGCGCUAGAGccGACA-CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 47903 0.67 0.383423
Target:  5'- -cGCCGUGAccgugCUCGGCggcGUGACGaccacaucgaacGGCa -3'
miRNA:   3'- gcCGGCGCUa----GAGCCGa--CACUGC------------CCG- -5'
17000 5' -60.3 NC_004333.2 + 36204 0.67 0.374855
Target:  5'- aCGGCCGCGAUCgUCGacGCUGcGuGCaaGGCg -3'
miRNA:   3'- -GCCGGCGCUAG-AGC--CGACaC-UGc-CCG- -5'
17000 5' -60.3 NC_004333.2 + 3936 0.67 0.374855
Target:  5'- uGGCCGaCGAUCU--GCUucggGACGGGUu -3'
miRNA:   3'- gCCGGC-GCUAGAgcCGAca--CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 41839 0.67 0.374855
Target:  5'- cCGGCCGCGAg--CGGU-----CGGGCa -3'
miRNA:   3'- -GCCGGCGCUagaGCCGacacuGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 28594 0.68 0.34994
Target:  5'- --aUCGCGGgucgCUCGGCUGcGACaGGCu -3'
miRNA:   3'- gccGGCGCUa---GAGCCGACaCUGcCCG- -5'
17000 5' -60.3 NC_004333.2 + 16820 0.68 0.344298
Target:  5'- gCGGCUGCGucgCUCGGCagcggucUGaUGaagcuggccggcauuGCGGGCg -3'
miRNA:   3'- -GCCGGCGCua-GAGCCG-------AC-AC---------------UGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 45192 0.68 0.341901
Target:  5'- cCGGCgaGCG-UCUaCGGCauuccguUGACGGGCg -3'
miRNA:   3'- -GCCGg-CGCuAGA-GCCGac-----ACUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 39649 0.68 0.333996
Target:  5'- cCGGUCGCGcugUUCGGC----ACGGGCg -3'
miRNA:   3'- -GCCGGCGCua-GAGCCGacacUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 9276 0.68 0.333996
Target:  5'- uGGCCGUgccGAUCagcgcgaagCGGCgcgGgugcgcgGACGGGCg -3'
miRNA:   3'- gCCGGCG---CUAGa--------GCCGa--Ca------CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 17005 0.68 0.330871
Target:  5'- aCGGCgCGCcGUCUgGGCggcgaugccaaGGCGGGCg -3'
miRNA:   3'- -GCCG-GCGcUAGAgCCGaca--------CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 5495 0.69 0.303725
Target:  5'- uCGGCCGgcguggagaCGAUCggcGCUGUuGCGGGCu -3'
miRNA:   3'- -GCCGGC---------GCUAGagcCGACAcUGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.