miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17000 5' -60.3 NC_004333.2 + 8982 0.69 0.296494
Target:  5'- gGGCCGUGcgCggCGGCgaccGACGcGGCg -3'
miRNA:   3'- gCCGGCGCuaGa-GCCGaca-CUGC-CCG- -5'
17000 5' -60.3 NC_004333.2 + 22202 0.69 0.282436
Target:  5'- gCGGCUGCGGccugCUCGauGCcGaGACGGGCc -3'
miRNA:   3'- -GCCGGCGCUa---GAGC--CGaCaCUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 40386 0.7 0.262347
Target:  5'- gCGGCCGacuCGAaCcCGGUUGaaGACGGGCa -3'
miRNA:   3'- -GCCGGC---GCUaGaGCCGACa-CUGCCCG- -5'
17000 5' -60.3 NC_004333.2 + 2176 0.7 0.255914
Target:  5'- aGGCCGUGccagccCUCGGCgccgaGUGGCaGGCc -3'
miRNA:   3'- gCCGGCGCua----GAGCCGa----CACUGcCCG- -5'
17000 5' -60.3 NC_004333.2 + 46144 0.7 0.249611
Target:  5'- gGGCgucgaCGUGAUCgaugCGGCcGUGAcguCGGGCa -3'
miRNA:   3'- gCCG-----GCGCUAGa---GCCGaCACU---GCCCG- -5'
17000 5' -60.3 NC_004333.2 + 45404 0.7 0.230883
Target:  5'- aGGCCGCagaccuggcacucGGUUUCGGCggcgGcGACGGcGCa -3'
miRNA:   3'- gCCGGCG-------------CUAGAGCCGa---CaCUGCC-CG- -5'
17000 5' -60.3 NC_004333.2 + 45435 1.11 0.000206
Target:  5'- gCGGCCGCGAUCUCGGCUGUGACGGGCa -3'
miRNA:   3'- -GCCGGCGCUAGAGCCGACACUGCCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.