miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17003 3' -56.9 NC_004333.2 + 3391 0.66 0.592358
Target:  5'- gGCGUCGCCGuCGUCGcgggagcuucggugaAGAacaGCUGCg- -3'
miRNA:   3'- -UGCGGCGGUuGUAGC---------------UCUg--CGACGag -5'
17003 3' -56.9 NC_004333.2 + 25537 0.66 0.592358
Target:  5'- cGCGCCGCUcgaggucagcgggucGACAUUGGcGAUcaGCUGCg- -3'
miRNA:   3'- -UGCGGCGG---------------UUGUAGCU-CUG--CGACGag -5'
17003 3' -56.9 NC_004333.2 + 20509 0.66 0.587953
Target:  5'- cCGCUGCCGGCcgcCGccGCGCcGCUCg -3'
miRNA:   3'- uGCGGCGGUUGua-GCucUGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 5151 0.66 0.587953
Target:  5'- -aGCCGCCcguguUGUCGAGcaGCGCaGCUUg -3'
miRNA:   3'- ugCGGCGGuu---GUAGCUC--UGCGaCGAG- -5'
17003 3' -56.9 NC_004333.2 + 17477 0.66 0.587953
Target:  5'- -gGCCGCC-GCGcUC---ACGCUGCUCg -3'
miRNA:   3'- ugCGGCGGuUGU-AGcucUGCGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 17010 0.66 0.587953
Target:  5'- uACGCCGUCGccGCGcucgacUCGuGcACGCUGCa- -3'
miRNA:   3'- -UGCGGCGGU--UGU------AGCuC-UGCGACGag -5'
17003 3' -56.9 NC_004333.2 + 17368 0.66 0.584654
Target:  5'- -aGUCGCUgugggagGACGUCGAGcagcgcaucgaGCUGCUCg -3'
miRNA:   3'- ugCGGCGG-------UUGUAGCUCug---------CGACGAG- -5'
17003 3' -56.9 NC_004333.2 + 36268 0.66 0.576969
Target:  5'- cGCGCCGCUGcGCAUgcCGGGcCGCgacgacaaggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU-UGUA--GCUCuGCG----------ACGAG- -5'
17003 3' -56.9 NC_004333.2 + 20557 0.66 0.576969
Target:  5'- cGCGCCGCUGAuCGUCGGcGCGUcgGgUCg -3'
miRNA:   3'- -UGCGGCGGUU-GUAGCUcUGCGa-CgAG- -5'
17003 3' -56.9 NC_004333.2 + 28465 0.66 0.576969
Target:  5'- cACGCCaCCAGCGcCGAGcACGCgaGCa- -3'
miRNA:   3'- -UGCGGcGGUUGUaGCUC-UGCGa-CGag -5'
17003 3' -56.9 NC_004333.2 + 15900 0.66 0.575872
Target:  5'- uCGCCGCCGACccgcgccAUCcGGAaggcuuucggcCGCUGCUg -3'
miRNA:   3'- uGCGGCGGUUG-------UAGcUCU-----------GCGACGAg -5'
17003 3' -56.9 NC_004333.2 + 17079 0.66 0.572587
Target:  5'- cGCGCCGCUGACGggCcAGGCGCcgaaccugcaggcGCUCg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GcUCUGCGa------------CGAG- -5'
17003 3' -56.9 NC_004333.2 + 6631 0.66 0.566029
Target:  5'- -gGUCGUgAGCAUCGcGACGCUGaCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCuCUGCGAC-Gag -5'
17003 3' -56.9 NC_004333.2 + 34298 0.66 0.566029
Target:  5'- gUGCCgGCCGACuUCGcgcGGCGCggcgcGCUCa -3'
miRNA:   3'- uGCGG-CGGUUGuAGCu--CUGCGa----CGAG- -5'
17003 3' -56.9 NC_004333.2 + 38929 0.66 0.566029
Target:  5'- uAUGCCGCacGCggCGAGGCGCccccGUUCg -3'
miRNA:   3'- -UGCGGCGguUGuaGCUCUGCGa---CGAG- -5'
17003 3' -56.9 NC_004333.2 + 15291 0.66 0.566029
Target:  5'- gGCGCgGUCAGCAUCagcaccGGGCGCUuGCcgUCg -3'
miRNA:   3'- -UGCGgCGGUUGUAGc-----UCUGCGA-CG--AG- -5'
17003 3' -56.9 NC_004333.2 + 273 0.66 0.555145
Target:  5'- cACGCCGCCgAGCA-CGGucacggucGACGuCUGCg- -3'
miRNA:   3'- -UGCGGCGG-UUGUaGCU--------CUGC-GACGag -5'
17003 3' -56.9 NC_004333.2 + 16856 0.66 0.555145
Target:  5'- uCGCgGCCAagGCgAUCGAcgGGCGaCUGUUCg -3'
miRNA:   3'- uGCGgCGGU--UG-UAGCU--CUGC-GACGAG- -5'
17003 3' -56.9 NC_004333.2 + 36848 0.66 0.544322
Target:  5'- cGCGCCGCCuuCAUCGc-GCGCgaccagUGCa- -3'
miRNA:   3'- -UGCGGCGGuuGUAGCucUGCG------ACGag -5'
17003 3' -56.9 NC_004333.2 + 8195 0.66 0.544322
Target:  5'- cGCGCCagucaaaaacGCCAGCAccucauuagUCGGGcacucuucgaGCGCuUGCUCg -3'
miRNA:   3'- -UGCGG----------CGGUUGU---------AGCUC----------UGCG-ACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.