miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 38211 0.65 0.864467
Target:  5'- uCGGCGguUCGguacacaaCGUGCGGUucgacgGCa -3'
miRNA:   3'- -GCCGCguAGCauuuua--GCGCGCCA------CG- -5'
17008 3' -52.3 NC_004333.2 + 28255 0.66 0.859445
Target:  5'- cCGGCGCGcUCGUc--GUCGaugauGCGGacgGCg -3'
miRNA:   3'- -GCCGCGU-AGCAuuuUAGCg----CGCCa--CG- -5'
17008 3' -52.3 NC_004333.2 + 9109 0.66 0.859445
Target:  5'- aCGGCGCA-CG---AGUCGCGCGuacucGCc -3'
miRNA:   3'- -GCCGCGUaGCauuUUAGCGCGCca---CG- -5'
17008 3' -52.3 NC_004333.2 + 6918 0.66 0.859445
Target:  5'- -uGCGCA-CGUuuGAggcgUGCGCGG-GCg -3'
miRNA:   3'- gcCGCGUaGCAuuUUa---GCGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 23162 0.66 0.858599
Target:  5'- cCGGCGCAcucCGUGGcGAUCagcgugacaggcgGCGCGGacGCa -3'
miRNA:   3'- -GCCGCGUa--GCAUU-UUAG-------------CGCGCCa-CG- -5'
17008 3' -52.3 NC_004333.2 + 33654 0.66 0.850876
Target:  5'- -cGUGCG-CGUGAucauGUCGUGCGaUGCg -3'
miRNA:   3'- gcCGCGUaGCAUUu---UAGCGCGCcACG- -5'
17008 3' -52.3 NC_004333.2 + 7297 0.66 0.850876
Target:  5'- cCGGCGCA--GUAgauaccGAGUCGCGCGa--- -3'
miRNA:   3'- -GCCGCGUagCAU------UUUAGCGCGCcacg -5'
17008 3' -52.3 NC_004333.2 + 22383 0.66 0.850876
Target:  5'- uCGGCGUGcgcgCGUGAuaaGAUCGCGCGc--- -3'
miRNA:   3'- -GCCGCGUa---GCAUU---UUAGCGCGCcacg -5'
17008 3' -52.3 NC_004333.2 + 28645 0.66 0.850876
Target:  5'- uGaGCGCccaaGUCGccGGAUCGCGgucgcagaauucCGGUGCg -3'
miRNA:   3'- gC-CGCG----UAGCauUUUAGCGC------------GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 45236 0.66 0.850006
Target:  5'- uCGGUgccgaccuguccgGCAUCG-AAGcgCGCGUGGcGCc -3'
miRNA:   3'- -GCCG-------------CGUAGCaUUUuaGCGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 28384 0.66 0.849133
Target:  5'- -aGCGCAUCGcacucaaCGCGCGGcacgaucccgUGCg -3'
miRNA:   3'- gcCGCGUAGCauuuua-GCGCGCC----------ACG- -5'
17008 3' -52.3 NC_004333.2 + 12019 0.66 0.848258
Target:  5'- aGGCGCucuacgucaacgaggCGUugAAGGUUGCGcCGGUcGCg -3'
miRNA:   3'- gCCGCGua-------------GCA--UUUUAGCGC-GCCA-CG- -5'
17008 3' -52.3 NC_004333.2 + 33357 0.66 0.848258
Target:  5'- aCGGCGCgccGUCGUGGaacgccugcugcccGAUCGCGUagaacGGcgaUGCc -3'
miRNA:   3'- -GCCGCG---UAGCAUU--------------UUAGCGCG-----CC---ACG- -5'
17008 3' -52.3 NC_004333.2 + 24652 0.66 0.842067
Target:  5'- uCGGCgGCuaccc-GAAagGCGCGGUGCu -3'
miRNA:   3'- -GCCG-CGuagcauUUUagCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 43449 0.66 0.842067
Target:  5'- aCGcGCGCAUCGcgcgcUUGCGCGccGCa -3'
miRNA:   3'- -GC-CGCGUAGCauuuuAGCGCGCcaCG- -5'
17008 3' -52.3 NC_004333.2 + 47994 0.66 0.842067
Target:  5'- gGGCGCAcgggcaGUGGAcUCGCGCcaGGcGCc -3'
miRNA:   3'- gCCGCGUag----CAUUUuAGCGCG--CCaCG- -5'
17008 3' -52.3 NC_004333.2 + 692 0.66 0.842067
Target:  5'- cCGGCGCcUCGUuca---GCGCGGcagucGCc -3'
miRNA:   3'- -GCCGCGuAGCAuuuuagCGCGCCa----CG- -5'
17008 3' -52.3 NC_004333.2 + 21527 0.66 0.835763
Target:  5'- cCGGCGCgAUCacgcucacgaGCgGCGGUGCg -3'
miRNA:   3'- -GCCGCG-UAGcauuuuag--CG-CGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 4642 0.66 0.833027
Target:  5'- aGGCGCGgucaUCGUcgagauacgccAGAAUCGCuuuggcGUGGUGg -3'
miRNA:   3'- gCCGCGU----AGCA-----------UUUUAGCG------CGCCACg -5'
17008 3' -52.3 NC_004333.2 + 34288 0.66 0.831192
Target:  5'- -cGCGCAgccCGUGccggccgacuUCGCGCGGcGCg -3'
miRNA:   3'- gcCGCGUa--GCAUuuu-------AGCGCGCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.