miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 692 0.66 0.842067
Target:  5'- cCGGCGCcUCGUuca---GCGCGGcagucGCc -3'
miRNA:   3'- -GCCGCGuAGCAuuuuagCGCGCCa----CG- -5'
17008 3' -52.3 NC_004333.2 + 800 0.71 0.587282
Target:  5'- uCGGCGCuuUCGUuucAUCGgGCGGcGUg -3'
miRNA:   3'- -GCCGCGu-AGCAuuuUAGCgCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 1275 0.67 0.804619
Target:  5'- uGGCGCGcCGccugg-CGCGCGuUGCg -3'
miRNA:   3'- gCCGCGUaGCauuuuaGCGCGCcACG- -5'
17008 3' -52.3 NC_004333.2 + 1687 0.67 0.77451
Target:  5'- cCGGCGCGcuugcagccuUUGUAAuAGUCGCGCaGUa- -3'
miRNA:   3'- -GCCGCGU----------AGCAUU-UUAGCGCGcCAcg -5'
17008 3' -52.3 NC_004333.2 + 1891 0.66 0.823765
Target:  5'- cCGGCGaUAUCGUGccAGUUGU-CGGUGUa -3'
miRNA:   3'- -GCCGC-GUAGCAUu-UUAGCGcGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 2482 0.73 0.448077
Target:  5'- aGGCGUgcGUUGUGGuagcuGAUCGCGCgcccgcucgguaGGUGCa -3'
miRNA:   3'- gCCGCG--UAGCAUU-----UUAGCGCG------------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 3120 0.67 0.77451
Target:  5'- gGGCGCGgc-------CGCGCGGUGUu -3'
miRNA:   3'- gCCGCGUagcauuuuaGCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 3186 0.67 0.77451
Target:  5'- -aGCGCGcCGUGguAGAUCGUaUGGUGCu -3'
miRNA:   3'- gcCGCGUaGCAU--UUUAGCGcGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 3297 0.7 0.643501
Target:  5'- uGGCGCAgcgagUCGggcagGuuGUCGCGCGcG-GCg -3'
miRNA:   3'- gCCGCGU-----AGCa----UuuUAGCGCGC-CaCG- -5'
17008 3' -52.3 NC_004333.2 + 3532 0.69 0.654754
Target:  5'- uCGGCGUAaaGcGGGAUCaaCGCGGUGCc -3'
miRNA:   3'- -GCCGCGUagCaUUUUAGc-GCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 4266 0.76 0.320989
Target:  5'- uCGGUGCGcuacguggCGUuuGGUCGCGCaGUGCg -3'
miRNA:   3'- -GCCGCGUa-------GCAuuUUAGCGCGcCACG- -5'
17008 3' -52.3 NC_004333.2 + 4642 0.66 0.833027
Target:  5'- aGGCGCGgucaUCGUcgagauacgccAGAAUCGCuuuggcGUGGUGg -3'
miRNA:   3'- gCCGCGU----AGCA-----------UUUUAGCG------CGCCACg -5'
17008 3' -52.3 NC_004333.2 + 5129 0.69 0.688337
Target:  5'- uCGGCGUcgguGUCGUAGAAcUCGacauGCGG-GCc -3'
miRNA:   3'- -GCCGCG----UAGCAUUUU-AGCg---CGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 6616 0.7 0.602975
Target:  5'- uGGCGCguugaagccgGUCGUGAGcAUCGCGacgcugacgaugugcCGGUGUu -3'
miRNA:   3'- gCCGCG----------UAGCAUUU-UAGCGC---------------GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 6918 0.66 0.859445
Target:  5'- -uGCGCA-CGUuuGAggcgUGCGCGG-GCg -3'
miRNA:   3'- gcCGCGUaGCAuuUUa---GCGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 7297 0.66 0.850876
Target:  5'- cCGGCGCA--GUAgauaccGAGUCGCGCGa--- -3'
miRNA:   3'- -GCCGCGUagCAU------UUUAGCGCGCcacg -5'
17008 3' -52.3 NC_004333.2 + 7682 0.7 0.63111
Target:  5'- cCGGCgaacccgaccacgGCGUCGUAGcgguGAUCgGCGCGGacaGCg -3'
miRNA:   3'- -GCCG-------------CGUAGCAUU----UUAG-CGCGCCa--CG- -5'
17008 3' -52.3 NC_004333.2 + 8648 0.68 0.72141
Target:  5'- uCGGCGCGgcgccCGgcuugcUCGUGaCGGUGCc -3'
miRNA:   3'- -GCCGCGUa----GCauuuu-AGCGC-GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 8842 0.75 0.345816
Target:  5'- gCGGUGCGUCGUAGAAgCGCGCcGccGCc -3'
miRNA:   3'- -GCCGCGUAGCAUUUUaGCGCGcCa-CG- -5'
17008 3' -52.3 NC_004333.2 + 8970 0.69 0.665986
Target:  5'- gGGCuGgAUCGUGGGccgUGCGCGGcgGCg -3'
miRNA:   3'- gCCG-CgUAGCAUUUua-GCGCGCCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.