miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 9109 0.66 0.859445
Target:  5'- aCGGCGCA-CG---AGUCGCGCGuacucGCc -3'
miRNA:   3'- -GCCGCGUaGCauuUUAGCGCGCca---CG- -5'
17008 3' -52.3 NC_004333.2 + 9604 0.67 0.804619
Target:  5'- cCGGCGCGgcaUCGgccGGUUGCGCaccGGcUGCc -3'
miRNA:   3'- -GCCGCGU---AGCauuUUAGCGCG---CC-ACG- -5'
17008 3' -52.3 NC_004333.2 + 9875 0.73 0.428241
Target:  5'- cCGGuCGCcgCGUGcacGGUCGCGC-GUGCa -3'
miRNA:   3'- -GCC-GCGuaGCAUu--UUAGCGCGcCACG- -5'
17008 3' -52.3 NC_004333.2 + 10213 0.68 0.76415
Target:  5'- gCGGC-CGUCGgcaucAAAgcugCGCGCGGUcuGCu -3'
miRNA:   3'- -GCCGcGUAGCau---UUUa---GCGCGCCA--CG- -5'
17008 3' -52.3 NC_004333.2 + 10573 0.7 0.620973
Target:  5'- gGGCGCAUCGca-----G-GCGGUGCu -3'
miRNA:   3'- gCCGCGUAGCauuuuagCgCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 10648 0.68 0.753647
Target:  5'- gCGGCGaagaAagGUGAcgucacGGUCGCGCcggccGGUGCa -3'
miRNA:   3'- -GCCGCg---UagCAUU------UUAGCGCG-----CCACG- -5'
17008 3' -52.3 NC_004333.2 + 10746 0.8 0.184123
Target:  5'- gCGGCGUAUCGUAc---CGCGCGGcccgGCg -3'
miRNA:   3'- -GCCGCGUAGCAUuuuaGCGCGCCa---CG- -5'
17008 3' -52.3 NC_004333.2 + 10992 0.75 0.363118
Target:  5'- cCGGCGCgcGUCGUGAGcggcguGUCGCcGCGcUGCg -3'
miRNA:   3'- -GCCGCG--UAGCAUUU------UAGCG-CGCcACG- -5'
17008 3' -52.3 NC_004333.2 + 11974 0.75 0.363118
Target:  5'- -cGCGCGUCGac-GAUCGCggccguaucGCGGUGCa -3'
miRNA:   3'- gcCGCGUAGCauuUUAGCG---------CGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 12019 0.66 0.848258
Target:  5'- aGGCGCucuacgucaacgaggCGUugAAGGUUGCGcCGGUcGCg -3'
miRNA:   3'- gCCGCGua-------------GCA--UUUUAGCGC-GCCA-CG- -5'
17008 3' -52.3 NC_004333.2 + 12189 0.67 0.794757
Target:  5'- aGGCGaCcgCGaaccAGGUCGCGagcaCGGUGCu -3'
miRNA:   3'- gCCGC-GuaGCau--UUUAGCGC----GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 13188 0.67 0.773481
Target:  5'- gGGCGCGauacgaUCGUGugcaggcgcGUCGCGUggacuucGGUGCc -3'
miRNA:   3'- gCCGCGU------AGCAUuu-------UAGCGCG-------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 13626 0.71 0.553942
Target:  5'- uCGGCGagcacuUCGUGc-AUCGCGCGGUa- -3'
miRNA:   3'- -GCCGCgu----AGCAUuuUAGCGCGCCAcg -5'
17008 3' -52.3 NC_004333.2 + 16673 0.69 0.692783
Target:  5'- cCGGUGCugcac-----CGCGCGGUGCg -3'
miRNA:   3'- -GCCGCGuagcauuuuaGCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 16784 0.72 0.510432
Target:  5'- gCGGCGCGcaagaaggaguUCGaUGAGAcgaaaCGCGCGGcUGCg -3'
miRNA:   3'- -GCCGCGU-----------AGC-AUUUUa----GCGCGCC-ACG- -5'
17008 3' -52.3 NC_004333.2 + 16867 0.68 0.743015
Target:  5'- gGGCGCcgugcUCGgc--GUCgGCGCaGGUGCg -3'
miRNA:   3'- gCCGCGu----AGCauuuUAG-CGCG-CCACG- -5'
17008 3' -52.3 NC_004333.2 + 17237 0.67 0.814293
Target:  5'- cCGGCGUAUCGccgGAcguGAUCGuCGCGaugaagGCa -3'
miRNA:   3'- -GCCGCGUAGCa--UU---UUAGC-GCGCca----CG- -5'
17008 3' -52.3 NC_004333.2 + 17336 0.66 0.823765
Target:  5'- aGGCGCucgacgCGUucua-CGaCGCGGUGUc -3'
miRNA:   3'- gCCGCGua----GCAuuuuaGC-GCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 17715 0.69 0.699434
Target:  5'- aGGCGCAgcCGUGAcGUCGa-CGGUGa -3'
miRNA:   3'- gCCGCGUa-GCAUUuUAGCgcGCCACg -5'
17008 3' -52.3 NC_004333.2 + 17849 0.68 0.76415
Target:  5'- cCGGUGCGgccgcgCGUAugg-CGgGUGGUGUc -3'
miRNA:   3'- -GCCGCGUa-----GCAUuuuaGCgCGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.