miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 42108 0.71 0.542948
Target:  5'- aGGCGUGUCGcGAGGU-GCGCcaguugccGGUGCa -3'
miRNA:   3'- gCCGCGUAGCaUUUUAgCGCG--------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 13626 0.71 0.553942
Target:  5'- uCGGCGagcacuUCGUGc-AUCGCGCGGUa- -3'
miRNA:   3'- -GCCGCgu----AGCAUuuUAGCGCGCCAcg -5'
17008 3' -52.3 NC_004333.2 + 37409 0.71 0.565001
Target:  5'- uCGGCGC-UCGcggu-UUGCGCGGcgUGCa -3'
miRNA:   3'- -GCCGCGuAGCauuuuAGCGCGCC--ACG- -5'
17008 3' -52.3 NC_004333.2 + 47956 0.71 0.587282
Target:  5'- uCGGCGCgcugGUCGUcgGcgucAUCG-GCGGUGUg -3'
miRNA:   3'- -GCCGCG----UAGCAuuU----UAGCgCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 800 0.71 0.587282
Target:  5'- uCGGCGCuuUCGUuucAUCGgGCGGcGUg -3'
miRNA:   3'- -GCCGCGu-AGCAuuuUAGCgCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 6616 0.7 0.602975
Target:  5'- uGGCGCguugaagccgGUCGUGAGcAUCGCGacgcugacgaugugcCGGUGUu -3'
miRNA:   3'- gCCGCG----------UAGCAUUU-UAGCGC---------------GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 28343 0.7 0.609719
Target:  5'- -uGCGCAUCGUAccAUCGCGCcgauaGUGg -3'
miRNA:   3'- gcCGCGUAGCAUuuUAGCGCGc----CACg -5'
17008 3' -52.3 NC_004333.2 + 31494 0.7 0.620973
Target:  5'- uCGGCGUucUCGUAcuGUCGCGCGu--- -3'
miRNA:   3'- -GCCGCGu-AGCAUuuUAGCGCGCcacg -5'
17008 3' -52.3 NC_004333.2 + 10573 0.7 0.620973
Target:  5'- gGGCGCAUCGca-----G-GCGGUGCu -3'
miRNA:   3'- gCCGCGUAGCauuuuagCgCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 7682 0.7 0.63111
Target:  5'- cCGGCgaacccgaccacgGCGUCGUAGcgguGAUCgGCGCGGacaGCg -3'
miRNA:   3'- -GCCG-------------CGUAGCAUU----UUAG-CGCGCCa--CG- -5'
17008 3' -52.3 NC_004333.2 + 3297 0.7 0.643501
Target:  5'- uGGCGCAgcgagUCGggcagGuuGUCGCGCGcG-GCg -3'
miRNA:   3'- gCCGCGU-----AGCa----UuuUAGCGCGC-CaCG- -5'
17008 3' -52.3 NC_004333.2 + 3532 0.69 0.654754
Target:  5'- uCGGCGUAaaGcGGGAUCaaCGCGGUGCc -3'
miRNA:   3'- -GCCGCGUagCaUUUUAGc-GCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 44956 0.69 0.654754
Target:  5'- cCGGCGuCAUCGggg---CGgGCGGcGCg -3'
miRNA:   3'- -GCCGC-GUAGCauuuuaGCgCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 20897 0.69 0.665986
Target:  5'- cCGGCGCAgcgCGUGcuacuuggCGCGCaGGauUGCa -3'
miRNA:   3'- -GCCGCGUa--GCAUuuua----GCGCG-CC--ACG- -5'
17008 3' -52.3 NC_004333.2 + 41321 0.69 0.665986
Target:  5'- cCGGCGCGcgauggaCGUGA---CGCGCGaGUGUg -3'
miRNA:   3'- -GCCGCGUa------GCAUUuuaGCGCGC-CACG- -5'
17008 3' -52.3 NC_004333.2 + 8970 0.69 0.665986
Target:  5'- gGGCuGgAUCGUGGGccgUGCGCGGcgGCg -3'
miRNA:   3'- gCCG-CgUAGCAUUUua-GCGCGCCa-CG- -5'
17008 3' -52.3 NC_004333.2 + 28740 0.69 0.665986
Target:  5'- aGGCGCuggcacgcgCGUGAAcGUCGCG-GGUaGCg -3'
miRNA:   3'- gCCGCGua-------GCAUUU-UAGCGCgCCA-CG- -5'
17008 3' -52.3 NC_004333.2 + 5129 0.69 0.688337
Target:  5'- uCGGCGUcgguGUCGUAGAAcUCGacauGCGG-GCc -3'
miRNA:   3'- -GCCGCG----UAGCAUUUU-AGCg---CGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 27198 0.69 0.688337
Target:  5'- uGGCgGCAgacCGUGcu-UCGCGCGGUa- -3'
miRNA:   3'- gCCG-CGUa--GCAUuuuAGCGCGCCAcg -5'
17008 3' -52.3 NC_004333.2 + 28866 0.69 0.688337
Target:  5'- cCGGCGCGcucaagcgcUCGUGccgcgcGAUCGCGCucGGcGCa -3'
miRNA:   3'- -GCCGCGU---------AGCAUu-----UUAGCGCG--CCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.