miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 22383 0.66 0.850876
Target:  5'- uCGGCGUGcgcgCGUGAuaaGAUCGCGCGc--- -3'
miRNA:   3'- -GCCGCGUa---GCAUU---UUAGCGCGCcacg -5'
17008 3' -52.3 NC_004333.2 + 28384 0.66 0.849133
Target:  5'- -aGCGCAUCGcacucaaCGCGCGGcacgaucccgUGCg -3'
miRNA:   3'- gcCGCGUAGCauuuua-GCGCGCC----------ACG- -5'
17008 3' -52.3 NC_004333.2 + 12019 0.66 0.848258
Target:  5'- aGGCGCucuacgucaacgaggCGUugAAGGUUGCGcCGGUcGCg -3'
miRNA:   3'- gCCGCGua-------------GCA--UUUUAGCGC-GCCA-CG- -5'
17008 3' -52.3 NC_004333.2 + 47994 0.66 0.842067
Target:  5'- gGGCGCAcgggcaGUGGAcUCGCGCcaGGcGCc -3'
miRNA:   3'- gCCGCGUag----CAUUUuAGCGCG--CCaCG- -5'
17008 3' -52.3 NC_004333.2 + 24652 0.66 0.842067
Target:  5'- uCGGCgGCuaccc-GAAagGCGCGGUGCu -3'
miRNA:   3'- -GCCG-CGuagcauUUUagCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 692 0.66 0.842067
Target:  5'- cCGGCGCcUCGUuca---GCGCGGcagucGCc -3'
miRNA:   3'- -GCCGCGuAGCAuuuuagCGCGCCa----CG- -5'
17008 3' -52.3 NC_004333.2 + 3186 0.67 0.77451
Target:  5'- -aGCGCGcCGUGguAGAUCGUaUGGUGCu -3'
miRNA:   3'- gcCGCGUaGCAU--UUUAGCGcGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 13188 0.67 0.773481
Target:  5'- gGGCGCGauacgaUCGUGugcaggcgcGUCGCGUggacuucGGUGCc -3'
miRNA:   3'- gCCGCGU------AGCAUuu-------UAGCGCG-------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 9604 0.67 0.804619
Target:  5'- cCGGCGCGgcaUCGgccGGUUGCGCaccGGcUGCc -3'
miRNA:   3'- -GCCGCGU---AGCauuUUAGCGCG---CC-ACG- -5'
17008 3' -52.3 NC_004333.2 + 1275 0.67 0.804619
Target:  5'- uGGCGCGcCGccugg-CGCGCGuUGCg -3'
miRNA:   3'- gCCGCGUaGCauuuuaGCGCGCcACG- -5'
17008 3' -52.3 NC_004333.2 + 28758 0.67 0.804619
Target:  5'- gCGaGCGCcgCGUcgac-CGCGCGGgucGCg -3'
miRNA:   3'- -GC-CGCGuaGCAuuuuaGCGCGCCa--CG- -5'
17008 3' -52.3 NC_004333.2 + 19570 0.67 0.794757
Target:  5'- uCGGCGCGgcacaaGggGAAUCGCGCGcGa-- -3'
miRNA:   3'- -GCCGCGUag----CauUUUAGCGCGC-Cacg -5'
17008 3' -52.3 NC_004333.2 + 33449 0.67 0.814293
Target:  5'- cCGGCaGCAUUGgcAGcggCGCGcCGG-GCg -3'
miRNA:   3'- -GCCG-CGUAGCauUUua-GCGC-GCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 17237 0.67 0.814293
Target:  5'- cCGGCGUAUCGccgGAcguGAUCGuCGCGaugaagGCa -3'
miRNA:   3'- -GCCGCGUAGCa--UU---UUAGC-GCGCca----CG- -5'
17008 3' -52.3 NC_004333.2 + 25404 0.67 0.804619
Target:  5'- gCGGCGCAUCGaacgcaguccUGAAuacgacGUCGCcGUGGUuCg -3'
miRNA:   3'- -GCCGCGUAGC----------AUUU------UAGCG-CGCCAcG- -5'
17008 3' -52.3 NC_004333.2 + 22141 0.67 0.794757
Target:  5'- cCGGCGCAcCGUcGAuuaccguucaAUUcCGUGGUGCu -3'
miRNA:   3'- -GCCGCGUaGCAuUU----------UAGcGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 3120 0.67 0.77451
Target:  5'- gGGCGCGgc-------CGCGCGGUGUu -3'
miRNA:   3'- gCCGCGUagcauuuuaGCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 1687 0.67 0.77451
Target:  5'- cCGGCGCGcuugcagccuUUGUAAuAGUCGCGCaGUa- -3'
miRNA:   3'- -GCCGCGU----------AGCAUU-UUAGCGCGcCAcg -5'
17008 3' -52.3 NC_004333.2 + 12189 0.67 0.794757
Target:  5'- aGGCGaCcgCGaaccAGGUCGCGagcaCGGUGCu -3'
miRNA:   3'- gCCGC-GuaGCau--UUUAGCGC----GCCACG- -5'
17008 3' -52.3 NC_004333.2 + 37288 0.67 0.77451
Target:  5'- uCGGCGCAa-GUGAcuGUCGCGcCGGcGUu -3'
miRNA:   3'- -GCCGCGUagCAUUu-UAGCGC-GCCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.