Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17008 | 3' | -52.3 | NC_004333.2 | + | 28866 | 0.69 | 0.688337 |
Target: 5'- cCGGCGCGcucaagcgcUCGUGccgcgcGAUCGCGCucGGcGCa -3' miRNA: 3'- -GCCGCGU---------AGCAUu-----UUAGCGCG--CCaCG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 20897 | 0.69 | 0.665986 |
Target: 5'- cCGGCGCAgcgCGUGcuacuuggCGCGCaGGauUGCa -3' miRNA: 3'- -GCCGCGUa--GCAUuuua----GCGCG-CC--ACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 13626 | 0.71 | 0.553942 |
Target: 5'- uCGGCGagcacuUCGUGc-AUCGCGCGGUa- -3' miRNA: 3'- -GCCGCgu----AGCAUuuUAGCGCGCCAcg -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 22891 | 0.79 | 0.198852 |
Target: 5'- uGGCGC-UCGUGAcgagcagaaGCGCGGUGCu -3' miRNA: 3'- gCCGCGuAGCAUUuuag-----CGCGCCACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 1275 | 0.67 | 0.804619 |
Target: 5'- uGGCGCGcCGccugg-CGCGCGuUGCg -3' miRNA: 3'- gCCGCGUaGCauuuuaGCGCGCcACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 21413 | 0.68 | 0.732265 |
Target: 5'- gCGGCGCcggaAUgGgcAAAUUGgGCGGcGCa -3' miRNA: 3'- -GCCGCG----UAgCauUUUAGCgCGCCaCG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 3532 | 0.69 | 0.654754 |
Target: 5'- uCGGCGUAaaGcGGGAUCaaCGCGGUGCc -3' miRNA: 3'- -GCCGCGUagCaUUUUAGc-GCGCCACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 10746 | 0.8 | 0.184123 |
Target: 5'- gCGGCGUAUCGUAc---CGCGCGGcccgGCg -3' miRNA: 3'- -GCCGCGUAGCAUuuuaGCGCGCCa---CG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 18367 | 0.68 | 0.72141 |
Target: 5'- aCGGCGUGUCGUuuAAccUCGC-CGGcaucaUGCu -3' miRNA: 3'- -GCCGCGUAGCAuuUU--AGCGcGCC-----ACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 39999 | 0.8 | 0.173716 |
Target: 5'- uGGCGCGuUCGUAGGAcugaucacggaacUCGCGCGGcGCc -3' miRNA: 3'- gCCGCGU-AGCAUUUU-------------AGCGCGCCaCG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 8970 | 0.69 | 0.665986 |
Target: 5'- gGGCuGgAUCGUGGGccgUGCGCGGcgGCg -3' miRNA: 3'- gCCG-CgUAGCAUUUua-GCGCGCCa-CG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 23682 | 0.69 | 0.691673 |
Target: 5'- gCGGCuGCAUCGUGgccggcgGAAaaccgagcgauuggcUCGCGCGaGUuGCg -3' miRNA: 3'- -GCCG-CGUAGCAU-------UUU---------------AGCGCGC-CA-CG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 10573 | 0.7 | 0.620973 |
Target: 5'- gGGCGCAUCGca-----G-GCGGUGCu -3' miRNA: 3'- gCCGCGUAGCauuuuagCgCGCCACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 37409 | 0.71 | 0.565001 |
Target: 5'- uCGGCGC-UCGcggu-UUGCGCGGcgUGCa -3' miRNA: 3'- -GCCGCGuAGCauuuuAGCGCGCC--ACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 28229 | 0.73 | 0.447073 |
Target: 5'- gGGCGCGUCacgGUGAccgugacGcgCGCGCGGcGCu -3' miRNA: 3'- gCCGCGUAG---CAUU-------UuaGCGCGCCaCG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 11974 | 0.75 | 0.363118 |
Target: 5'- -cGCGCGUCGac-GAUCGCggccguaucGCGGUGCa -3' miRNA: 3'- gcCGCGUAGCauuUUAGCG---------CGCCACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 32503 | 0.66 | 0.822827 |
Target: 5'- gCGGCGaaauuUCGUugacccgGAAgcguuugccgacGUCGCGCGGcGCg -3' miRNA: 3'- -GCCGCgu---AGCA-------UUU------------UAGCGCGCCaCG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 9604 | 0.67 | 0.804619 |
Target: 5'- cCGGCGCGgcaUCGgccGGUUGCGCaccGGcUGCc -3' miRNA: 3'- -GCCGCGU---AGCauuUUAGCGCG---CC-ACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 13188 | 0.67 | 0.773481 |
Target: 5'- gGGCGCGauacgaUCGUGugcaggcgcGUCGCGUggacuucGGUGCc -3' miRNA: 3'- gCCGCGU------AGCAUuu-------UAGCGCG-------CCACG- -5' |
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17008 | 3' | -52.3 | NC_004333.2 | + | 22593 | 0.68 | 0.747283 |
Target: 5'- uCGGCGC-UCGUGuuguucgcguccgucGGguucGUCGCGCcuGUGCg -3' miRNA: 3'- -GCCGCGuAGCAU---------------UU----UAGCGCGc-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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