miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17008 3' -52.3 NC_004333.2 + 41832 1.13 0.000928
Target:  5'- cCGGCGCAUCGUAAAAUCGCGCGGUGCg -3'
miRNA:   3'- -GCCGCGUAGCAUUUUAGCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 19128 0.84 0.092968
Target:  5'- uCGGCGCgAUCGUGGGcg-GCGCGGUGCu -3'
miRNA:   3'- -GCCGCG-UAGCAUUUuagCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 20571 0.81 0.151451
Target:  5'- uCGGCGCGUCGg---GUCGCGCcguGGUGUu -3'
miRNA:   3'- -GCCGCGUAGCauuuUAGCGCG---CCACG- -5'
17008 3' -52.3 NC_004333.2 + 39999 0.8 0.173716
Target:  5'- uGGCGCGuUCGUAGGAcugaucacggaacUCGCGCGGcGCc -3'
miRNA:   3'- gCCGCGU-AGCAUUUU-------------AGCGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 10746 0.8 0.184123
Target:  5'- gCGGCGUAUCGUAc---CGCGCGGcccgGCg -3'
miRNA:   3'- -GCCGCGUAGCAUuuuaGCGCGCCa---CG- -5'
17008 3' -52.3 NC_004333.2 + 22891 0.79 0.198852
Target:  5'- uGGCGC-UCGUGAcgagcagaaGCGCGGUGCu -3'
miRNA:   3'- gCCGCGuAGCAUUuuag-----CGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 4266 0.76 0.320989
Target:  5'- uCGGUGCGcuacguggCGUuuGGUCGCGCaGUGCg -3'
miRNA:   3'- -GCCGCGUa-------GCAuuUUAGCGCGcCACG- -5'
17008 3' -52.3 NC_004333.2 + 8842 0.75 0.345816
Target:  5'- gCGGUGCGUCGUAGAAgCGCGCcGccGCc -3'
miRNA:   3'- -GCCGCGUAGCAUUUUaGCGCGcCa-CG- -5'
17008 3' -52.3 NC_004333.2 + 10992 0.75 0.363118
Target:  5'- cCGGCGCgcGUCGUGAGcggcguGUCGCcGCGcUGCg -3'
miRNA:   3'- -GCCGCG--UAGCAUUU------UAGCG-CGCcACG- -5'
17008 3' -52.3 NC_004333.2 + 11974 0.75 0.363118
Target:  5'- -cGCGCGUCGac-GAUCGCggccguaucGCGGUGCa -3'
miRNA:   3'- gcCGCGUAGCauuUUAGCG---------CGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 42011 0.74 0.403247
Target:  5'- uCGGUGCG-CGUGAAG-CGCGCGGccaacgagcggggcgUGCu -3'
miRNA:   3'- -GCCGCGUaGCAUUUUaGCGCGCC---------------ACG- -5'
17008 3' -52.3 NC_004333.2 + 41722 0.74 0.408932
Target:  5'- aCGGCGCgAUCaacgagGAGAUCgGCGCGG-GCg -3'
miRNA:   3'- -GCCGCG-UAGca----UUUUAG-CGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 9875 0.73 0.428241
Target:  5'- cCGGuCGCcgCGUGcacGGUCGCGC-GUGCa -3'
miRNA:   3'- -GCC-GCGuaGCAUu--UUAGCGCGcCACG- -5'
17008 3' -52.3 NC_004333.2 + 28229 0.73 0.447073
Target:  5'- gGGCGCGUCacgGUGAccgugacGcgCGCGCGGcGCu -3'
miRNA:   3'- gCCGCGUAG---CAUU-------UuaGCGCGCCaCG- -5'
17008 3' -52.3 NC_004333.2 + 24559 0.73 0.448077
Target:  5'- aCGGCGCGUUGaaccAGGUCGCGCGcaucGCu -3'
miRNA:   3'- -GCCGCGUAGCau--UUUAGCGCGCca--CG- -5'
17008 3' -52.3 NC_004333.2 + 2482 0.73 0.448077
Target:  5'- aGGCGUgcGUUGUGGuagcuGAUCGCGCgcccgcucgguaGGUGCa -3'
miRNA:   3'- gCCGCG--UAGCAUU-----UUAGCGCG------------CCACG- -5'
17008 3' -52.3 NC_004333.2 + 37302 0.72 0.510432
Target:  5'- aGGCGacgCGUuccagucGGUCGCgGCGGUGCu -3'
miRNA:   3'- gCCGCguaGCAuu-----UUAGCG-CGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 31496 0.72 0.510432
Target:  5'- gCGGUGCuUCcgcac--CGCGCGGUGCa -3'
miRNA:   3'- -GCCGCGuAGcauuuuaGCGCGCCACG- -5'
17008 3' -52.3 NC_004333.2 + 16784 0.72 0.510432
Target:  5'- gCGGCGCGcaagaaggaguUCGaUGAGAcgaaaCGCGCGGcUGCg -3'
miRNA:   3'- -GCCGCGU-----------AGC-AUUUUa----GCGCGCC-ACG- -5'
17008 3' -52.3 NC_004333.2 + 21883 0.72 0.521186
Target:  5'- cCGGCuuucGCAUCGacg----GCGCGGUGCg -3'
miRNA:   3'- -GCCG----CGUAGCauuuuagCGCGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.