miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 5' -61.8 NC_004333.2 + 40606 1.11 0.000135
Target:  5'- cUGCGCAUGGGUCUGCCGCCGACCGCCa -3'
miRNA:   3'- -ACGCGUACCCAGACGGCGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 9943 0.77 0.062147
Target:  5'- cGCGCA-GGuGUUUGCCGUCGaACCGCa -3'
miRNA:   3'- aCGCGUaCC-CAGACGGCGGC-UGGCGg -5'
17010 5' -61.8 NC_004333.2 + 29746 0.75 0.086795
Target:  5'- cGCGCucgcGGuGUCgacGCCGCCGAUCGCg -3'
miRNA:   3'- aCGCGua--CC-CAGa--CGGCGGCUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 9623 0.74 0.094283
Target:  5'- uUGCGCAccGG-CUGCCGgCGGCgCGCCu -3'
miRNA:   3'- -ACGCGUacCCaGACGGCgGCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 44243 0.73 0.108136
Target:  5'- gGCGCcaaccugccgGUcGGcCUGCCGCCGcuGCCGCCu -3'
miRNA:   3'- aCGCG----------UAcCCaGACGGCGGC--UGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 27740 0.73 0.108136
Target:  5'- gGCGCGaaucuGGUCgGCCGCCGAgcCCGUCa -3'
miRNA:   3'- aCGCGUac---CCAGaCGGCGGCU--GGCGG- -5'
17010 5' -61.8 NC_004333.2 + 32751 0.73 0.111128
Target:  5'- cGCGCA-GGucgCUGCCGCCGGCCa-- -3'
miRNA:   3'- aCGCGUaCCca-GACGGCGGCUGGcgg -5'
17010 5' -61.8 NC_004333.2 + 29640 0.73 0.114196
Target:  5'- cUGcCGCAcccGGG-UUGCCGCCGGCUGCg -3'
miRNA:   3'- -AC-GCGUa--CCCaGACGGCGGCUGGCGg -5'
17010 5' -61.8 NC_004333.2 + 13925 0.73 0.114196
Target:  5'- gGCGauCGUGGccgCUGCCGCCagcguGGCCGCCu -3'
miRNA:   3'- aCGC--GUACCca-GACGGCGG-----CUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 41211 0.73 0.123883
Target:  5'- gUGCGCGaGGGcuacCUGUCGCCGGucgugUCGCCg -3'
miRNA:   3'- -ACGCGUaCCCa---GACGGCGGCU-----GGCGG- -5'
17010 5' -61.8 NC_004333.2 + 24191 0.72 0.127278
Target:  5'- aGCGCGaaUGcgacGGUaccgGCCGCCuGGCCGCCg -3'
miRNA:   3'- aCGCGU--AC----CCAga--CGGCGG-CUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 16017 0.72 0.149513
Target:  5'- aGCGCGUGGccg-GCCuGCCGACaguCGCCg -3'
miRNA:   3'- aCGCGUACCcagaCGG-CGGCUG---GCGG- -5'
17010 5' -61.8 NC_004333.2 + 44594 0.72 0.151115
Target:  5'- gGCGUGUGGGaaaacaccguaccgCUGCCGCCGcGCaugcaaGCCg -3'
miRNA:   3'- aCGCGUACCCa-------------GACGGCGGC-UGg-----CGG- -5'
17010 5' -61.8 NC_004333.2 + 13532 0.71 0.153547
Target:  5'- cGUGCucgcGGcgUUGCCGCCGGCgGCCa -3'
miRNA:   3'- aCGCGuac-CCa-GACGGCGGCUGgCGG- -5'
17010 5' -61.8 NC_004333.2 + 15444 0.71 0.166246
Target:  5'- cUGCGCGUGacguUCUGCuCGCCGGCUaucgcuGCCg -3'
miRNA:   3'- -ACGCGUACcc--AGACG-GCGGCUGG------CGG- -5'
17010 5' -61.8 NC_004333.2 + 46536 0.71 0.166246
Target:  5'- aGCGCAUucaGGG-CUacGCCGCCGACgaCGCa -3'
miRNA:   3'- aCGCGUA---CCCaGA--CGGCGGCUG--GCGg -5'
17010 5' -61.8 NC_004333.2 + 11328 0.71 0.170684
Target:  5'- aUGUGC-UGGGUUgauagcgGCCGgCGAUgGCCg -3'
miRNA:   3'- -ACGCGuACCCAGa------CGGCgGCUGgCGG- -5'
17010 5' -61.8 NC_004333.2 + 6411 0.71 0.175228
Target:  5'- cGCGCAUGcGGUCgUGCCGUaCGGCaaauCGCa -3'
miRNA:   3'- aCGCGUAC-CCAG-ACGGCG-GCUG----GCGg -5'
17010 5' -61.8 NC_004333.2 + 3202 0.7 0.184639
Target:  5'- -uCGUAUGGuG-CUGCaGUCGGCCGCCg -3'
miRNA:   3'- acGCGUACC-CaGACGgCGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 20485 0.7 0.194494
Target:  5'- aGCGUcccgGcGG-CUGCCgcgcaaccgcuGCCGGCCGCCg -3'
miRNA:   3'- aCGCGua--C-CCaGACGG-----------CGGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.