Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 9943 | 0.77 | 0.062147 |
Target: 5'- cGCGCA-GGuGUUUGCCGUCGaACCGCa -3' miRNA: 3'- aCGCGUaCC-CAGACGGCGGC-UGGCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 29205 | 0.68 | 0.26366 |
Target: 5'- cGCGCAUGGcGUCguuccaGCCGuuG-CC-CCa -3' miRNA: 3'- aCGCGUACC-CAGa-----CGGCggCuGGcGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 4860 | 0.68 | 0.270246 |
Target: 5'- cGCGcCGUGccgaUGCCGCUG-CCGCCg -3' miRNA: 3'- aCGC-GUACccagACGGCGGCuGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 33361 | 0.66 | 0.376484 |
Target: 5'- cGCGCcgucGUGGaacGcCUGCUGCCcGAUCGCg -3' miRNA: 3'- aCGCG----UACC---CaGACGGCGG-CUGGCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 13925 | 0.73 | 0.114196 |
Target: 5'- gGCGauCGUGGccgCUGCCGCCagcguGGCCGCCu -3' miRNA: 3'- aCGC--GUACCca-GACGGCGG-----CUGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 41211 | 0.73 | 0.123883 |
Target: 5'- gUGCGCGaGGGcuacCUGUCGCCGGucgugUCGCCg -3' miRNA: 3'- -ACGCGUaCCCa---GACGGCGGCU-----GGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 44594 | 0.72 | 0.151115 |
Target: 5'- gGCGUGUGGGaaaacaccguaccgCUGCCGCCGcGCaugcaaGCCg -3' miRNA: 3'- aCGCGUACCCa-------------GACGGCGGC-UGg-----CGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 13532 | 0.71 | 0.153547 |
Target: 5'- cGUGCucgcGGcgUUGCCGCCGGCgGCCa -3' miRNA: 3'- aCGCGuac-CCa-GACGGCGGCUGgCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 45007 | 0.7 | 0.204806 |
Target: 5'- gGCGCGcu-GUCcgGCCGCuCGACCGCg -3' miRNA: 3'- aCGCGUaccCAGa-CGGCG-GCUGGCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 44964 | 0.68 | 0.257205 |
Target: 5'- cGCGCAc--GUCgGCgGCCGACUGCa -3' miRNA: 3'- aCGCGUaccCAGaCGgCGGCUGGCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 23527 | 0.69 | 0.238614 |
Target: 5'- cGCGCcuuucGGGUa-GCCGCCGAuCUGCg -3' miRNA: 3'- aCGCGua---CCCAgaCGGCGGCU-GGCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 20485 | 0.7 | 0.194494 |
Target: 5'- aGCGUcccgGcGG-CUGCCgcgcaaccgcuGCCGGCCGCCg -3' miRNA: 3'- aCGCGua--C-CCaGACGG-----------CGGCUGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 9623 | 0.74 | 0.094283 |
Target: 5'- uUGCGCAccGG-CUGCCGgCGGCgCGCCu -3' miRNA: 3'- -ACGCGUacCCaGACGGCgGCUG-GCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 11048 | 0.68 | 0.244683 |
Target: 5'- cGCGCccGGGUCgaauUC-UCGACCGCCg -3' miRNA: 3'- aCGCGuaCCCAGac--GGcGGCUGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 27740 | 0.73 | 0.108136 |
Target: 5'- gGCGCGaaucuGGUCgGCCGCCGAgcCCGUCa -3' miRNA: 3'- aCGCGUac---CCAGaCGGCGGCU--GGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 6411 | 0.71 | 0.175228 |
Target: 5'- cGCGCAUGcGGUCgUGCCGUaCGGCaaauCGCa -3' miRNA: 3'- aCGCGUAC-CCAG-ACGGCG-GCUG----GCGg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 13895 | 0.68 | 0.257205 |
Target: 5'- gGCcgGCAcGGG-CUGCgCGgCGGCUGCCg -3' miRNA: 3'- aCG--CGUaCCCaGACG-GCgGCUGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 229 | 0.68 | 0.269581 |
Target: 5'- aUGUGCGUcGGGUCgccccacgccgUGCCGuUCGauguggucgucacGCCGCCg -3' miRNA: 3'- -ACGCGUA-CCCAG-----------ACGGC-GGC-------------UGGCGG- -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 32751 | 0.73 | 0.111128 |
Target: 5'- cGCGCA-GGucgCUGCCGCCGGCCa-- -3' miRNA: 3'- aCGCGUaCCca-GACGGCGGCUGGcgg -5' |
|||||||
17010 | 5' | -61.8 | NC_004333.2 | + | 24191 | 0.72 | 0.127278 |
Target: 5'- aGCGCGaaUGcgacGGUaccgGCCGCCuGGCCGCCg -3' miRNA: 3'- aCGCGU--AC----CCAga--CGGCGG-CUGGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home