miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17010 5' -61.8 NC_004333.2 + 229 0.68 0.269581
Target:  5'- aUGUGCGUcGGGUCgccccacgccgUGCCGuUCGauguggucgucacGCCGCCg -3'
miRNA:   3'- -ACGCGUA-CCCAG-----------ACGGC-GGC-------------UGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 706 0.67 0.290799
Target:  5'- aGCGCGgcaGUC-GCCGCCGGCgCGUUg -3'
miRNA:   3'- aCGCGUaccCAGaCGGCGGCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 2271 0.66 0.376484
Target:  5'- aGCGCAgcgcGUUUGCCGUCGGCaaGUCg -3'
miRNA:   3'- aCGCGUacc-CAGACGGCGGCUGg-CGG- -5'
17010 5' -61.8 NC_004333.2 + 3202 0.7 0.184639
Target:  5'- -uCGUAUGGuG-CUGCaGUCGGCCGCCg -3'
miRNA:   3'- acGCGUACC-CaGACGgCGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 4860 0.68 0.270246
Target:  5'- cGCGcCGUGccgaUGCCGCUG-CCGCCg -3'
miRNA:   3'- aCGC-GUACccagACGGCGGCuGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 6411 0.71 0.175228
Target:  5'- cGCGCAUGcGGUCgUGCCGUaCGGCaaauCGCa -3'
miRNA:   3'- aCGCGUAC-CCAG-ACGGCG-GCUG----GCGg -5'
17010 5' -61.8 NC_004333.2 + 8919 0.68 0.244683
Target:  5'- cGCGCGUGc----GCCuGCCGGCCGCUc -3'
miRNA:   3'- aCGCGUACccagaCGG-CGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 9458 0.67 0.297916
Target:  5'- cUGCGCAccaggcgcGGGU--GCCGCaCcGCCGCCg -3'
miRNA:   3'- -ACGCGUa-------CCCAgaCGGCG-GcUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 9623 0.74 0.094283
Target:  5'- uUGCGCAccGG-CUGCCGgCGGCgCGCCu -3'
miRNA:   3'- -ACGCGUacCCaGACGGCgGCUG-GCGG- -5'
17010 5' -61.8 NC_004333.2 + 9943 0.77 0.062147
Target:  5'- cGCGCA-GGuGUUUGCCGUCGaACCGCa -3'
miRNA:   3'- aCGCGUaCC-CAGACGGCGGC-UGGCGg -5'
17010 5' -61.8 NC_004333.2 + 11048 0.68 0.244683
Target:  5'- cGCGCccGGGUCgaauUC-UCGACCGCCg -3'
miRNA:   3'- aCGCGuaCCCAGac--GGcGGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 11328 0.71 0.170684
Target:  5'- aUGUGC-UGGGUUgauagcgGCCGgCGAUgGCCg -3'
miRNA:   3'- -ACGCGuACCCAGa------CGGCgGCUGgCGG- -5'
17010 5' -61.8 NC_004333.2 + 13532 0.71 0.153547
Target:  5'- cGUGCucgcGGcgUUGCCGCCGGCgGCCa -3'
miRNA:   3'- aCGCGuac-CCa-GACGGCGGCUGgCGG- -5'
17010 5' -61.8 NC_004333.2 + 13895 0.68 0.257205
Target:  5'- gGCcgGCAcGGG-CUGCgCGgCGGCUGCCg -3'
miRNA:   3'- aCG--CGUaCCCaGACG-GCgGCUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 13925 0.73 0.114196
Target:  5'- gGCGauCGUGGccgCUGCCGCCagcguGGCCGCCu -3'
miRNA:   3'- aCGC--GUACCca-GACGGCGG-----CUGGCGG- -5'
17010 5' -61.8 NC_004333.2 + 15444 0.71 0.166246
Target:  5'- cUGCGCGUGacguUCUGCuCGCCGGCUaucgcuGCCg -3'
miRNA:   3'- -ACGCGUACcc--AGACG-GCGGCUGG------CGG- -5'
17010 5' -61.8 NC_004333.2 + 16017 0.72 0.149513
Target:  5'- aGCGCGUGGccg-GCCuGCCGACaguCGCCg -3'
miRNA:   3'- aCGCGUACCcagaCGG-CGGCUG---GCGG- -5'
17010 5' -61.8 NC_004333.2 + 17151 0.66 0.368028
Target:  5'- aUGCGCGaGGaaGUCgUGCgCGUCGACaagGCCg -3'
miRNA:   3'- -ACGCGUaCC--CAG-ACG-GCGGCUGg--CGG- -5'
17010 5' -61.8 NC_004333.2 + 17207 0.66 0.35151
Target:  5'- aGgGCuuuAUGGaGUCgcgcuugacgGCCGCCGGCguauCGCCg -3'
miRNA:   3'- aCgCG---UACC-CAGa---------CGGCGGCUG----GCGG- -5'
17010 5' -61.8 NC_004333.2 + 17832 0.66 0.359702
Target:  5'- -cCGCGUGaaacuGUCUGCCGgugCGGCCGCg -3'
miRNA:   3'- acGCGUACc----CAGACGGCg--GCUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.