miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 5' -52.8 NC_004333.2 + 40268 1.07 0.002085
Target:  5'- uCAACUACCCGCAACGCCAGUCGUACUu -3'
miRNA:   3'- -GUUGAUGGGCGUUGCGGUCAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 41219 0.75 0.316411
Target:  5'- gGGCUACCUGU--CGCCGGUCGUGu- -3'
miRNA:   3'- gUUGAUGGGCGuuGCGGUCAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 35087 0.74 0.36721
Target:  5'- aCAACUGgCUGCGcacACGCCAGUCGg--- -3'
miRNA:   3'- -GUUGAUgGGCGU---UGCGGUCAGCauga -5'
17011 5' -52.8 NC_004333.2 + 20734 0.72 0.443166
Target:  5'- gAACUACCCGaauGGCGCCuGGUCG-ACa -3'
miRNA:   3'- gUUGAUGGGCg--UUGCGG-UCAGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 29574 0.72 0.453271
Target:  5'- -uGCcGCCCGCGccugccGCGCCGGUCGUuuguuGCa -3'
miRNA:   3'- guUGaUGGGCGU------UGCGGUCAGCA-----UGa -5'
17011 5' -52.8 NC_004333.2 + 44786 0.72 0.453271
Target:  5'- aAGCU-CCCGCGacgacggcgACGCCGGUCG-ACa -3'
miRNA:   3'- gUUGAuGGGCGU---------UGCGGUCAGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 30413 0.71 0.538153
Target:  5'- gCAAUUACCgCGCGGCGCCGGcUGaaUGCUu -3'
miRNA:   3'- -GUUGAUGG-GCGUUGCGGUCaGC--AUGA- -5'
17011 5' -52.8 NC_004333.2 + 19427 0.7 0.54918
Target:  5'- -cGCUACCCGCGACGuUCAcgcgCGUGCc -3'
miRNA:   3'- guUGAUGGGCGUUGC-GGUca--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 6345 0.7 0.560276
Target:  5'- cCGACcGCUCGCGgccggGCGCC-GUCGUGCc -3'
miRNA:   3'- -GUUGaUGGGCGU-----UGCGGuCAGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 18171 0.7 0.571434
Target:  5'- cCGAUUGCCgGCGugccgggugauGCGCUcGUCGUGCg -3'
miRNA:   3'- -GUUGAUGGgCGU-----------UGCGGuCAGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 11690 0.7 0.571434
Target:  5'- gAACaUAUCCgucgacGCAGCGCCGGgcggCGUGCUg -3'
miRNA:   3'- gUUG-AUGGG------CGUUGCGGUCa---GCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 29826 0.69 0.605185
Target:  5'- -uGCUGaucgCCGCGcCGCCAGUCG-ACUg -3'
miRNA:   3'- guUGAUg---GGCGUuGCGGUCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 41249 0.69 0.616497
Target:  5'- uCGACUggcGCCCGCGcACGCCucaaaCGUGCg -3'
miRNA:   3'- -GUUGA---UGGGCGU-UGCGGuca--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 47949 0.69 0.627824
Target:  5'- aAGCUGCUCGgcGCGCUGGUCGUcgGCg -3'
miRNA:   3'- gUUGAUGGGCguUGCGGUCAGCA--UGa -5'
17011 5' -52.8 NC_004333.2 + 43408 0.69 0.638022
Target:  5'- gCAGCcGCCCGCGcaggcagACGCUcgGGUCGgGCUg -3'
miRNA:   3'- -GUUGaUGGGCGU-------UGCGG--UCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 2668 0.69 0.639155
Target:  5'- gGGCgcCCCGCc-CGCCAGUUGUAg- -3'
miRNA:   3'- gUUGauGGGCGuuGCGGUCAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 46233 0.68 0.661785
Target:  5'- aGGCgGCCCGCGuCGCCGGUgCGggccaGCUg -3'
miRNA:   3'- gUUGaUGGGCGUuGCGGUCA-GCa----UGA- -5'
17011 5' -52.8 NC_004333.2 + 19706 0.68 0.661785
Target:  5'- -uGCUGCUCGCGugcucgGCGCUGGUggCGUGCa -3'
miRNA:   3'- guUGAUGGGCGU------UGCGGUCA--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 44229 0.68 0.683176
Target:  5'- --cCUACCUGCAGaacggcgccaaccUGCCGGUCGgcCUg -3'
miRNA:   3'- guuGAUGGGCGUU-------------GCGGUCAGCauGA- -5'
17011 5' -52.8 NC_004333.2 + 23166 0.68 0.684298
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.