miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 5' -52.8 NC_004333.2 + 41219 0.75 0.316411
Target:  5'- gGGCUACCUGU--CGCCGGUCGUGu- -3'
miRNA:   3'- gUUGAUGGGCGuuGCGGUCAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 25419 0.67 0.739441
Target:  5'- gCAGCgUGCCgGCGgcggccgucACGCCGGgCGUGCc -3'
miRNA:   3'- -GUUG-AUGGgCGU---------UGCGGUCaGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 23166 0.68 0.684298
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5'
17011 5' -52.8 NC_004333.2 + 19706 0.68 0.661785
Target:  5'- -uGCUGCUCGCGugcucgGCGCUGGUggCGUGCa -3'
miRNA:   3'- guUGAUGGGCGU------UGCGGUCA--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 47949 0.69 0.627824
Target:  5'- aAGCUGCUCGgcGCGCUGGUCGUcgGCg -3'
miRNA:   3'- gUUGAUGGGCguUGCGGUCAGCA--UGa -5'
17011 5' -52.8 NC_004333.2 + 29826 0.69 0.605185
Target:  5'- -uGCUGaucgCCGCGcCGCCAGUCG-ACUg -3'
miRNA:   3'- guUGAUg---GGCGUuGCGGUCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 37996 0.66 0.821066
Target:  5'- -cACUGCCCGCGuCGCuCGGcuuccaGUGCg -3'
miRNA:   3'- guUGAUGGGCGUuGCG-GUCag----CAUGa -5'
17011 5' -52.8 NC_004333.2 + 26816 0.66 0.821066
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
17011 5' -52.8 NC_004333.2 + 9545 0.66 0.781566
Target:  5'- gAGCUGCUucaaUGCGGCGCCGaUCGUGg- -3'
miRNA:   3'- gUUGAUGG----GCGUUGCGGUcAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 31326 0.68 0.706599
Target:  5'- aCGGC-GCCCGCAAUGCCGG-CcaGCUu -3'
miRNA:   3'- -GUUGaUGGGCGUUGCGGUCaGcaUGA- -5'
17011 5' -52.8 NC_004333.2 + 43408 0.69 0.638022
Target:  5'- gCAGCcGCCCGCGcaggcagACGCUcgGGUCGgGCUg -3'
miRNA:   3'- -GUUGaUGGGCGU-------UGCGG--UCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 19427 0.7 0.54918
Target:  5'- -cGCUACCCGCGACGuUCAcgcgCGUGCc -3'
miRNA:   3'- guUGAUGGGCGUUGC-GGUca--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 47482 0.66 0.790709
Target:  5'- gCGACUGCCgCGCugaacgaGGCGCCGGcCG-GCg -3'
miRNA:   3'- -GUUGAUGG-GCG-------UUGCGGUCaGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 11690 0.7 0.571434
Target:  5'- gAACaUAUCCgucgacGCAGCGCCGGgcggCGUGCUg -3'
miRNA:   3'- gUUG-AUGGG------CGUUGCGGUCa---GCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 42666 0.68 0.706599
Target:  5'- gAGCaGCCCGCAacaGCGCCGaUCGU-CUc -3'
miRNA:   3'- gUUGaUGGGCGU---UGCGGUcAGCAuGA- -5'
17011 5' -52.8 NC_004333.2 + 37926 0.66 0.801692
Target:  5'- aAACUGCCUGCGuCGUgGGaaGUGCa -3'
miRNA:   3'- gUUGAUGGGCGUuGCGgUCagCAUGa -5'
17011 5' -52.8 NC_004333.2 + 18171 0.7 0.571434
Target:  5'- cCGAUUGCCgGCGugccgggugauGCGCUcGUCGUGCg -3'
miRNA:   3'- -GUUGAUGGgCGU-----------UGCGGuCAGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 36078 0.67 0.750175
Target:  5'- gAGCUgGCCCGUGacgcggcgcugcGCGCCAGccaCGUACg -3'
miRNA:   3'- gUUGA-UGGGCGU------------UGCGGUCa--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 41249 0.69 0.616497
Target:  5'- uCGACUggcGCCCGCGcACGCCucaaaCGUGCg -3'
miRNA:   3'- -GUUGA---UGGGCGU-UGCGGuca--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 2668 0.69 0.639155
Target:  5'- gGGCgcCCCGCc-CGCCAGUUGUAg- -3'
miRNA:   3'- gUUGauGGGCGuuGCGGUCAGCAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.