miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17011 5' -52.8 NC_004333.2 + 467 0.66 0.810508
Target:  5'- gCGACgUGCCgGCGagcgugaACGCUucGUCGUACUu -3'
miRNA:   3'- -GUUG-AUGGgCGU-------UGCGGu-CAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 781 0.66 0.791717
Target:  5'- gCGAUUGCuuGC-GCGUCGGUCGgcGCUu -3'
miRNA:   3'- -GUUGAUGggCGuUGCGGUCAGCa-UGA- -5'
17011 5' -52.8 NC_004333.2 + 2270 0.66 0.811478
Target:  5'- cCAGCUcggcaagcACCUcgaGCAGCGCCucGUCGUAg- -3'
miRNA:   3'- -GUUGA--------UGGG---CGUUGCGGu-CAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 2668 0.69 0.639155
Target:  5'- gGGCgcCCCGCc-CGCCAGUUGUAg- -3'
miRNA:   3'- gUUGauGGGCGuuGCGGUCAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 6345 0.7 0.560276
Target:  5'- cCGACcGCUCGCGgccggGCGCC-GUCGUGCc -3'
miRNA:   3'- -GUUGaUGGGCGU-----UGCGGuCAGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 6738 0.67 0.769168
Target:  5'- cCGACUcGCCCGCGucgagcaGCGCCuGUucgaucaugugcgCGUGCUc -3'
miRNA:   3'- -GUUGA-UGGGCGU-------UGCGGuCA-------------GCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 9545 0.66 0.781566
Target:  5'- gAGCUGCUucaaUGCGGCGCCGaUCGUGg- -3'
miRNA:   3'- gUUGAUGG----GCGUUGCGGUcAGCAUga -5'
17011 5' -52.8 NC_004333.2 + 11690 0.7 0.571434
Target:  5'- gAACaUAUCCgucgacGCAGCGCCGGgcggCGUGCUg -3'
miRNA:   3'- gUUG-AUGGG------CGUUGCGGUCa---GCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 13011 0.66 0.821066
Target:  5'- gCAACUGCCgGCGAUGgCGGUgCGa--- -3'
miRNA:   3'- -GUUGAUGGgCGUUGCgGUCA-GCauga -5'
17011 5' -52.8 NC_004333.2 + 15795 0.67 0.739441
Target:  5'- cCGAgaACCCcgacGCGGCGCUgaacGUCGUGCUg -3'
miRNA:   3'- -GUUgaUGGG----CGUUGCGGu---CAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 18171 0.7 0.571434
Target:  5'- cCGAUUGCCgGCGugccgggugauGCGCUcGUCGUGCg -3'
miRNA:   3'- -GUUGAUGGgCGU-----------UGCGGuCAGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 18316 0.67 0.77021
Target:  5'- aCGACUACCgCGCGcgcuucgcugcgaACGaUCAGUCG-ACUg -3'
miRNA:   3'- -GUUGAUGG-GCGU-------------UGC-GGUCAGCaUGA- -5'
17011 5' -52.8 NC_004333.2 + 19427 0.7 0.54918
Target:  5'- -cGCUACCCGCGACGuUCAcgcgCGUGCc -3'
miRNA:   3'- guUGAUGGGCGUUGC-GGUca--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 19452 0.66 0.781566
Target:  5'- uGGCcgACCUGCGuuucuacggcAUGCCggaAGUCGUGCUg -3'
miRNA:   3'- gUUGa-UGGGCGU----------UGCGG---UCAGCAUGA- -5'
17011 5' -52.8 NC_004333.2 + 19706 0.68 0.661785
Target:  5'- -uGCUGCUCGCGugcucgGCGCUGGUggCGUGCa -3'
miRNA:   3'- guUGAUGGGCGU------UGCGGUCA--GCAUGa -5'
17011 5' -52.8 NC_004333.2 + 20734 0.72 0.443166
Target:  5'- gAACUACCCGaauGGCGCCuGGUCG-ACa -3'
miRNA:   3'- gUUGAUGGGCg--UUGCGG-UCAGCaUGa -5'
17011 5' -52.8 NC_004333.2 + 23166 0.68 0.684298
Target:  5'- ----cGCCCGUcACGUCGGUCGgUGCg -3'
miRNA:   3'- guugaUGGGCGuUGCGGUCAGC-AUGa -5'
17011 5' -52.8 NC_004333.2 + 25419 0.67 0.739441
Target:  5'- gCAGCgUGCCgGCGgcggccgucACGCCGGgCGUGCc -3'
miRNA:   3'- -GUUG-AUGGgCGU---------UGCGGUCaGCAUGa -5'
17011 5' -52.8 NC_004333.2 + 26816 0.66 0.821066
Target:  5'- cCGACggcccgGCCUGCAGCGUC-GUagcgaGUGCUg -3'
miRNA:   3'- -GUUGa-----UGGGCGUUGCGGuCAg----CAUGA- -5'
17011 5' -52.8 NC_004333.2 + 29574 0.72 0.453271
Target:  5'- -uGCcGCCCGCGccugccGCGCCGGUCGUuuguuGCa -3'
miRNA:   3'- guUGaUGGGCGU------UGCGGUCAGCA-----UGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.